TABLE 5

Analysis of suspected recombinant data sets

Data setρaΦwbcχ2NSSr2ad|D′|adLPTade
Candida162.4 × 10−15* (0.000*)0.000*0.000*0.000* (0.000*)0.122 (0.001)0.000* (0.000*)
Rana5.5 × 10−31* (0.000*)0.000*0.000*
Cowdria173.8 × 10−5* (0.000*)0.041*0.001*0.167 (0.039*)0.043* (0.029*)0.000* (0.001*)
H. pylori≥1009.3 × 10−3* (0.004*)0.1580.3300.125 (0.000*)0.536 (0.003*)0.000* (0.000*)
  • * P < 0.05.

  • a Calculated on sites with only two alleles segregating with LDHat.

  • b Each pair shows P-values calculated analytically and using a permutation test, respectively.

  • c w was set to 100 for all tests.

  • d Terms in parentheses show results on sites with minor allele frequencies >0.1.

  • e Denotes the value of a likelihood permutation test calculated in LDHat.