TABLE 3

Genes with the strongest linkage to marker 270 up- or downregulated in association with the presence of the Col allele at the marker site

AGI nameSFPaSNPb
Genes upregulated in association with the Col allele
At2g18540
At5g47800×
At5g47940×
At5g48240
At5g50410×
At5g50550
At5g50560
At5g50565
At5g50570
At5g50580
At5g50630
At5g51670
At5g51820
At5g51960×
At5g51980×
At5g53000×
At5g53050×
At5g53070
At5g53120××
At5g53950×
At5g58730
At5g59140
At5g59290
Genes downregulated in association with the Col allele
At5g48110×
At5g49840××
At5g50230
At5g51390
At5g52540
At5g53360
At5g53370
At5g53420
At5g53760
At5g53850
At5g58350×
  • a Single-feature polymorphism is a sequence polymorphism detected as a difference in hybridization intensity of randomly labeled genomic DNA to a single feature on a high-density oligonucleotide array (Borevitz et al. 2003).

  • b Single-nucleotide polymorphism is a single-base polymorphism usually detected through DNA sequencing analysis.