TABLE 3

Results of bottleneck simulations

TbaSbbMethod IcMethod IIdMethod IIIe
0.01000.3400.180<0.0010.090
0.4000.2100.0050.140
0.0122f0.371f0.150<0.0010.082
0.0125f0.350f0.130<0.0010.073
0.0128f0.345f0.120<0.0010.069
0.02000.3400.050<0.0010.030
0.4000.060<0.0010.031
0.0264f0.380f0.028<0.0010.013
0.0267f0.400f0.028<0.0010.014
0.03000.3400.016<0.0010.006
0.4000.018<0.0010.008
0.05000.3400.002<0.0010.0007
0.4000.003<0.0010.0012
  • a Age of the bottleneck, measured in 3Ne generations.

  • b Strength of the bottleneck.

  • c Probability of observing at most one segregating site in loci 4–9 under the assumption of no recombination between fragments, conditioned on the observation of 43 segregating sites in the entire region and zero polymorphisms in wapl.

  • d Probability of observing at most one segregating site in loci 4–9 under the assumption of intergenic recombination (with ρ = 0.48 × 10−8 rec/bp/generation), conditioned on the observation of 43 segregating sites in the entire region and zero polymorphisms in wapl.

  • e Probability of observing at most one segregating site in loci 4–9 under the assumption of intergenic recombination, conditioned on the observation of at most 43 segregating sites in the entire region and zero polymorphisms in wapl.

  • f From Ometto et al. (2005).