TABLE 6

The effect of finite-sites mutation on maxhap and Rholike

Maxhap
θ per siteLength (kb)ConstantVaryingMaxhap
0.00120.95 (0.80–1.10)1.05 (0.65–1.55)0.48 (0.42–0.56)0.45 (0.25–0.70)
0.00151.05 (0.95–1.15)1.05 (0.85–1.25)0.92 (0.86–1.00)0.95 (0.80–1.10)
0.00521.25 (1.05–1.40)1.20 (1.00–1.40)1.45 (1.30–1.60)1.40 (1.20–1.60)
0.00550.90 (0.80–1.00)1.10 (0.95–1.20)1.36 (1.26–1.46)1.55 (1.40–1.65)
0.0121.20 (1.05–1.35)1.40 (1.25–1.60)2.10 (1.85–2.35)1.95 (1.75–2.15)
0.0151.00 (0.90–1.10)1.15 (1.05–1.25)
0.01101.00 (0.95–1.10)1.10 (1.00–1.15)
0.0221.20 (1.15–1.35)1.55 (1.45–1.70)
0.0251.20 (1.10–1.25)1.35 (1.25–1.40)
0.02101.10 (1.00–1.15)1.30 (1.25–1.35)
0.0521.70 (1.55–1.80)2.60 (2.45–2.75)
  • (Computational difficulties prevented us from using Rholike to analyze data sets when the mutation rate across the complete sequence was >25. Bias results are given as in Table 3.