TABLE 5

Robustness of the three methods to variations in recombination rates, SNP ascertainment, and the presence of gene conversion

ModelMaxhapSequenceLDRholike
Variation (0.5–1.5)0.95 (0.80–1.10)1.00 (0.90–1.15)0.95 (0.85–1.05)
Variation (0.25–4.0)0.90 (0.75–1.00)0.85 (0.75–1.00)1.00 (0.90–1.10)
SNP ascertainment0.70 (0.60–0.85)0.85 (0.70–0.95)0.60 (0.50–0.70)
SNP ascertainment 20.90 (0.75–1.10)1.00 (0.90–1.10)0.80 (0.70–0.95)
Gene conversion 1/kb1.15 (0.95–1.30)1.25 (1.10–1.35)1.05 (0.95–1.20)
Gene conversion 5/kb1.30 (1.15–1.50)2.25 (2.05–2.40)1.45 (1.30–1.55)
Gene conversion 10/kb2.00 (1.75–2.25)4.10 (3.85–4.35)2.00 (1.85–2.15)
  • Bias results are as in Table 3.