TABLE 3

Total haplotype (Hd) and nucleotide (π and ΘW per site) diversity and neutrality test statistics (D, D*, and F*) in 18 Douglas fir candidate genes

GeneTotal haplotypesHaplotypes excluding indels (h)Hd ± SDπ ± SDΘW ± SDTajima's DFu and Li's D*Fu and Li's F*
EF1A1717***0.940 ± 0.031*0.00274 ± 0.000200.00339 ± 0.00136*−0.656−0.493−0.636
TBE2421***0.963 ± 0.024**0.00516 ± 0.000630.00626 ± 0.00209−0.723−0.847−0.951
F3H176*0.690 ± 0.061*0.00528 ± 0.001790.00988 ± 0.003961.576*2.550*2.633*
F3H2880.828 ± 0.0420.00629 ± 0.000750.00562 ± 0.002250.1500.3840.365
Formin-like33***0.585 ± 0.045**0.00480 ± 0.000230.00229 ± 0.00144*1.4981.0661.381
AT11818***0.966 ± 0.017***0.00936 ± 0.000550.00935 ± 0.00304−0.037−0.146−0.131
LEA214120.884 ± 0.0270.00647 ± 0.000660.00878 ± 0.00321−0.862−0.234−0.522
MT-like13120.907 ± 0.0270.01334 ± 0.00098*0.00911 ± 0.003421.639*1.621**1.909**
60S-RPL31a880.701 ± 0.088*0.01011 ± 0.001260.00891 ± 0.003320.4790.7580.786
LEA-EMB111817***0.950 ± 0.024**0.01378 ± 0.00163*0.01594 ± 0.00560**−0.5930.3960.093
40S-RPS3a880.810 ± 0.0460.00601 ± 0.00110.00617 ± 0.00255−0.3360.6320.390
PolyUBQ990.840 ± 0.0470.00544 ± 0.000490.00494 ± 0.001920.3570.8860.845
ERD15-like870.598 ± 0.105*0.00438 ± 0.001300.00563 ± 0.00227−0.7570.7120.304
ABA-WDS990.825 ± 0.0450.00662 ± 0.000970.00672 ± 0.00298−0.048−0.914−0.761
LP3-like14120.866 ± 0.0330.00662 ± 0.000850.00848 ± 0.00319−0.7130.3680.017
4CL1990.841 ± 0.0380.00268 ± 0.000260.00316 ± 0.00143*−0.4601.900*−1.705
4CL210100.814 ± 0.0410.00237 ± 0.00033*0.00378 ± 0.00159*−1.128−0.319−0.676
APX12120.884 ± 0.0410.00636 ± 0.000800.00789 ± 0.00285−0.700−0.504−0.665
Mean11.611.00.827 ± 0.0430.00655 ± 0.000820.00702 ± 0.00269−0.248−0.060−0.144
  • Italic entries are statistically significant values for test statistics (D, D*, and F*) and values for haplotype number (h), haplotype diversity (Hd), and nucleotide diversity (π and ΘW) that were statistically different from average values based on coalescence simulations (*P < 0.05; **P < 0.01; ***P < 0.001).