TABLE 2

Number of SNPs discovered in 18 Douglas fir candidate genes

GeneTotal sites (bp)Total SNP sites (S)Average frequency of SNPs (bp/SNP)Singleton SNPsTrinucleotide SNPsParsimony informative SNPsSNPs in coding regionsSNPs in noncoding regionsSilent (synonymous and noncoding) SNPs
EF1A1,07214775097714
TBE2,954585122136203851
F3H136514261004868
F3H2647144621126811
Formin-like3373112013301
AT2,578932827166306393
LEA25041828501371115
MT-like5792029002041618
60S-RPL31a6092129301861521
LEA-EMB1154533177126132027
40S-RPS3a5001242211011112
PolyUBQ898175320159817
ERD15-like646144620127710
ABA-WDS3449384059n/a5
LP3-like4811630301312412
4CL1628879503534
4CL26291063307736
APX8672633901732324
Mean843.522.2466.20.316.18.714.219.2
Total15,1834001116289157243349