TABLE 3

Nature of genomic variations in the RILs at the primary nucleotide sequence level

No. and length of indel
DeletionInsertion
CloneSource of sequenceLocationLength
 sequenced (bp)No. of nucleotide
 substitutions (bp)No.bpNo.bp
AF18Matsumae vs. RZ2Chromosome 2 217  7 29
AF41Matsumae vs. RZ2Chromosome 10 209  4
AF49Matsumae vs. RZ1Chromosome 12 242  4 17
AF72Matsumae vs. RZ2Chromosome 4 150  5 27
AF81Matsumae vs. RZ2Chromosome 5 259 21
AF92Matsumae vs. RZ2Chromosome 10 191  2 11114
AF101Matsumae vs. RZ1Chromosome 6 165  2118
AF103Matsumae vs. RZ35Chromosome 4 212  2
AF133Matsumae vs. RZ1Chromosome 3 218  3
AF135Matsumae vs. RZ2Chromosome 11 193  3
AF156Matsumae vs. RZ2Chromosome 3 398  1
AF158Matsumae vs. R2Chromosome 2 340 433 7
AF161Matsumae vs. RZ2Chromosome 10 263  3 1 1
AF197Matsumae vs. RZ1Chromosome 7 274  3 121
AF207Matsumae vs. R2Chromosome 7 269 27 14213
AF210Matsumae vs. RZ2Chromosome 12  80 161 2
AF212Matsumae vs. RZ1Chromosome 7 156 111 4
AF278Matsumae vs. RZ1Chromosome 8 153  11 3
AF283Matsumae vs. RZ2Chromosome 11 592  6 11
AF341aMatsumae vs. RZ2Chromosome 3 412  21107
AF352Matsumae vs. RZ2Chromosome 5 619 26 22
AF387Matsumae vs. RZ35Chromosome 7 555  5 1111
AF418Matsumae vs. RZ1Chromosome 10 154 14
AF477Matsumae vs. RZ35Chromosome 11 206 14231
AF480Matsumae vs. RZ2Chromosome 2 419  73 4
AF499Matsumae vs. RZ1Chromosome 6 301  1
AF609Matsumae vs. RZ1Chromosome 7 555  3 111 1
Total7802236145518205
  • a From Z. latifolia.