TABLE 5

Average pairwise linkage disequilibrium

GeneNo. sitesCCA1CYT1MLS1PDR10ZDS2
CCA1110.750.730.760.820.65
CYT1 40.360.880.590.650.58
MLS1200.330.280.940.750.69
PDR10140.270.230.230.980.57
ZDS2100.340.330.300.260.71
  • Linkage disequilibrium (LD) within a locus is shown on the diagonal, LD between loci is shown above the diagonal, LD between randomized data is shown below the diagonal. Linkage disequilibrium was measured by the absolute value of D′ for sites with a minor allele frequency of >10%. Only the 45 strains with complete data for all five genes were used.