TABLE 10

Haplotypes from two hypervariable regions upstrem of MLS1

Region 1Region 2
Strains201203226233242249253288294295296328637641649661691720721
S. mikataeCATTTCAAGGGNNNNNNN
S. paradoxusCATAACAATACGTCTATAA
4T......C.TT..T...CT
K5T..C...C.TT..T...CT
7T......C..T..T...CT
4T......T..T..T...CT
2TT..CT..C....T...CT
YJM421G...CT.CC.T..T.G.CT
YJM440T...CT.CC.TA.T...CC
40TT..CT..C....TC..TC
Y6TT..CT..C....T..CTC
Y3TT..CT..C....T...TC
3TG..CT.TC.T..T...CT
2.....T.TC.T.C....CC
YJM339.....T.TC.T......CC
3..G..TGCC.T......CC
YPS1000T....T.CC.T......CC
YJM454T......CC.T......CC
YPS1009T...CT.CC.T......CC
4TT..CT.CC.T......TC
  • Nucleotide positions are shown in two regions upstream of MLS1. The strains column lists the number of strains with the haplotype shown on the right or the name of the strain if the haplotype is unique.