TABLE 4

Joint probabilities of haplotype configuration and number of segregating sites for n = 5 and θ = 1

Configuration (c)q(c|n, θ)q(c, 0|n, θ)q(c, 1|n, θ)q(c, 2|n, θ)q(c, 3|n, θ)q(c, 4|n, θ)q(c, 5|n, θ)Embedded Image
(5, 0, 0, 0, 0)0.008300000.00220.00230.0039
(3, 1, 0, 0, 0)0.08330000.02730.02310.01470.0181
(2, 0, 1, 0, 0)0.1667000.07400.04350.02350.01240.0132
(1, 2, 0, 0, 0)0.1250000.05210.03340.01870.01000.0108
(1, 0, 0, 1, 0)0.250000.16080.04820.02090.01010.00500.0050
(0, 1, 1, 0, 0)0.166700.09580.03680.01720.00850.00420.0042
(0, 0, 0, 0, 1)0.20000.2000000000
  • q(c|n, θ) is given by the Ewens sampling formula (12), and q(c, s|n, θ) is obtained from (1).