TABLE 4

Tests of selection

Sample
GD test: maize vs.
 ssp. parviglumisFst test: maize
 vs. ssp. parviglumisEwens-Watterson:
 maize
SSRsMutation
 model:SMMGSMIAMSMMGSMIAMIAM: pHIAM: pE
bnlg10220.00250.0250.9950.95
bnlg10460.9750.9750.9750.9950.995
bnlg10940.9950.950.975
bnlg1182*0.950.99750.9975
bnlg12370.0250.95
bnlg14840.00250.0250.9950.950.9750.975
bnlg15230.00250.0250.9950.9950.99750.9975
bnlg17460.99750.99750.99750.0250.025
bnlg19370.00250.00250.9950.9950.975
bnlg4260.0250.9950.95
mmc03810.9750.025
nc0040.0250.95
phi0500.0250.0250.0250.95
phi963420.0250.9950.95
umc10750.0250.95
umc10780.9750.9750.025
umc11150.0250.95
umc12460.0250.95
umc12990.0250.95
umc13010.0250.0250.95
umc13660.9750.9750.00250.0025
umc14540.0250.0250.95
umc14700.0250.95
umc16750.00250.0250.95
umc18290.9750.9750.9750.025
umc19500.0250.95
umc19700.950.975
umc19800.00250.0250.95
umc20310.0250.0250.9950.95
  • The names of the markers and P-values for the selection test are presented for SSRs that have at least two significant probabilities for the tests shown. The Fst and the GD tests are based on simulations with the three models of mutation: the infinite allele model (IAM), the generalized stepwise model (GSM), and the stepwise mutation model (SMM). The probability for the Ewens-Watterson test was calculated as the probability obtained by the expected homozygosity (pH) test and the probability given by an exact test (pE).