TABLE 1

Evaluation of asymptotic confidence region

Sample
 size = 50Sample
 size = 100
1,000 sites0.023320.01911
5,000 sites0.037740.06186
10,000 sites0.037500.05155
20,000 sites0.061220.05096
  • Proportion of simulations where the log-likelihood ratio lies outside the two-dimensional asymptotic confidence region (log-likelihood ratio >3) is shown. Each value is based on 5000 repetitions with parameter values of frec = 5, fint = 0.5, and T = 1.