Sample size = 50 | Sample size = 100 | |
---|---|---|

1,000 sites | 0.02332 | 0.01911 |

5,000 sites | 0.03774 | 0.06186 |

10,000 sites | 0.03750 | 0.05155 |

20,000 sites | 0.06122 | 0.05096 |

Proportion of simulations where the log-likelihood ratio lies outside the two-dimensional asymptotic confidence region (log-likelihood ratio >3) is shown. Each value is based on 5000 repetitions with parameter values of

*f*_{rec}= 5,*f*_{int}= 0.5, and*T*= 1.