TABLE 3

Results of pairwise HKA tests between fw and 10 neutral loci

PopulationSignificant
 comparisons
 with fwTotal
 significant
 comparisonsP
CH 0 41
PUR 5 57.2E-05
BBS 4 40.00062
KATH10103.4E-11
MAN 9161.6E-05
CNX 1 10.18
BKK 2 30.08
KK 2 20.0303
BOG 0 01
DAR 3 30.00457
CEB 4 40.00062
MNL 1 10.18
KMJ 7 91.9E-05
  • The HKA test was performed for all pairwise comparisons between loci [11 loci (fw + 10 neutral loci) → 55 comparisons], for each of the 13 sampled populations. For each population, the probability of observing at least i significant tests at the fw locus given that n paired tests were performed and k were significant between the l loci was calculated using Equation 1 (see materials and methods). Populations in italics indicate that the number of comparisons deviating from the neutral expectation was significantly higher than expected for this population.