TABLE 2

Results of simulations of parameter estimates using the maximum-likelihood estimators based on polymorphism and divergence

No intragenic recombinationIntragenic recombination
ParameterValueaMeanMedianStandard errorMeanMedianStandard error
T17.8318.5018.180.098218.2218.040.0840
θ1 0.0084 0.0084 0.00827.4 × 10−5 0.0083 0.00816.6 × 10−5
θ2 0.0070 0.0068 0.00666.4 × 10−5 0.0069 0.00696.0 × 10−5
θ3 0.0067 0.0066 0.00666.5 × 10−5 0.0066 0.00656.1 × 10−5
θ4 0.0066 0.0066 0.00646.2 × 10−5 0.0066 0.00655.7 × 10−5
θ5 0.0049 0.0049 0.00484.9 × 10−5 0.0049 0.00494.7 × 10−5
θ6 0.0085 0.0085 0.00847.0 × 10−5 0.0085 0.00836.5 × 10−5
θ7 0.0052 0.0052 0.00505.4 × 10−5 0.0052 0.00505.0 × 10−5
θ8 0.0068 0.0068 0.00676.0 × 10−5 0.0069 0.00685.2 × 10−5
θ9 0.0090 0.0089 0.00877.5 × 10−5 0.0090 0.00877.0 × 10−5
θ10 0.0282 0.0280 0.02751.7 × 10−4 0.0284 0.02781.6 × 10−4
θ11 0.0105 0.0103 0.01018.1 × 10−5 0.0106 0.01048.1 × 10−5
θ12 0.0127 0.0126 0.01249.2 × 10−5 0.0129 0.01279.3 × 10−5
θ13 0.0079 0.0078 0.00756.4 × 10−5 0.0079 0.00786.2 × 10−5
θ14 0.0077 0.0076 0.00736.7 × 10−5 0.0076 0.00766.3 × 10−5
θ15 0.0131 0.0131 0.01299.1 × 10−5 0.0131 0.01309.0 × 10−5
θ16 0.0115 0.0113 0.01128.8 × 10−5 0.0115 0.01148.0 × 10−5
θ17 0.0087 0.0086 0.00837.8 × 10−5 0.0087 0.00857.4 × 10−5
θ18 0.0054 0.0054 0.00525.2 × 10−5 0.0054 0.00535.1 × 10−5
  • a Values of divergence time and population mutation parameters used in simulations.