Analysis of interference based on random spores
Random spores | Individual spores from Set II tetrads | ||||
---|---|---|---|---|---|
Met+ spores that are NAT-hph noncrossovers | Met+ spores that are NAT-HPH crossovers (P < 0.0001) | Nonselected NAT-hph noncrossover spores | Nonselected NAT-HPH crossover spores (P = 0.0005) | Total NAT-hph and NAT-HPH spores | |
A. Crossing over in the lys5-NAT interval among individual sporesa | |||||
Crossovers | 82 | 37 | 518 | 25 | 543 |
Noncrossovers | 397 | 429 | 2063 | 212 | 2275 |
χ2 P (interference) | 0.29 (none) | <0.0001 (positive) | 0.48 (none) | 0.0012 (positive) | |
Random spores | Individual spores from Set II tetrads | ||||
Met+ spores that are NAT-hph noncrossovers | Met+ spores that are NAT-HPH crossovers (P = 0.0015) | Nonselected NAT-hph noncrossover spores | Nonselected NAT-HPH crossover spores (P = 0.029) | Total NAT-hph and NAT-HPH spores | |
B. Crossing over in the HPH-cyh2 interval among individual sporesa | |||||
Crossovers | 57 | 27 | 266 | 13 | 279 |
Noncrossovers | 422 | 439 | 2346 | 222 | 2568 |
χ2 P (interference) | 0.18 (none) | 0.007 (positive) | 0.67 (none) | 0.042 (positive) |
↵a A comparison of MET13 prototrophic random spores derived from a met13-1/met13-5 diploid (first two columns) with equivalent segregants obtained by treating the 1451 tetrads in set II as individual spores (last two columns). Only NAT-containing spores were counted so that crossover and noncrossover events were counted only once, to permit statistical comparisons with the random Met+ spore data.
The χ2 P-values at the heads of columns 2 and 4 compare the crossovers in those columns to the noncrossovers in columns 1 and 3, respectively. The χ2 P-values in the last rows of parts A and B compare the data in those columns with the total number of NAT-hph and NAT-HPH segregants in set II, treated as single spores. Random spores were obtained from a yeast diploid strain obtained by a cross between haploid strains isogenic to those used for tetrad analysis (Table 1, set II). The diploid used to generate Met+ random spores was derived from the haploids MATα lys5 NAT met13-1 cyh2 KAN and MATa ade5,7 leu1 HPH trp5 met13-5 crl3. The randomness of the spores was verified by monitoring phenotypes at both the ADE5,7 and the LEU1 loci (480 Ade− and 465 Ade+; 434 Leu− and 511 Leu+). Among Met+ spores, there were 466 crossovers (371 Nat− Hph− and 95 Nat+ Hph+) and 479 noncrossovers (370 Nat+ Hph− and 109 Nat− Hph+) for the flanking markers. The inequalities in both the crossover and noncrossover classes suggest that 78% of Met+ spores are the result of conversion of met13-1. This bias is expected from the sign and magnitude of the slope of the conversion gradient at the MET13 locus, where met13-5 is at the low-conversion end (J. McCusker and J. E. Haber, unpublished data).