TABLE 4

Colinearity between the wheat group 2 consensus map and the rice genome

Rice chromosomea
Wheat
 chromosome 2
 consensus bin123456789101112No
 matchTotal
 matchesProbability
 (1st)bProbability
 (2nd)c
6S1 10  51 1 30 18<0.001<0.001
4S-6S  1  411 14  70.0010.249
2S-6S 1  1  4  20.1530.091
5S  2  2  20.007
4S-5S  1  0  10.083
4S 1 16 1 19 18<0.0010.174
3S-4S1 1  8 1  6 11<0.0010.249
2S-4S  1  0  10.083
3S  1  2  10.083
2S-3S 1  5 1  2  7<0.0010.174
CS-3S  4  1  4<0.001
2S11 2  3  3  70.0140.044
CS-2S1 1  61  2  9<0.0010.249
1S 1  8  6  9<0.0010.091
CS-1S  2  0
CS1 1  1 21 10 24<0.0010.249
CL 4  5 111 12 21<0.0010.001
CL-1L  41  5 11 10<0.001<0.001
CL-4L  3  3  3<0.001
1L1 1  71  7 10<0.0010.249
1L-2L  5  1  8  6<0.0010.091
1L-5L  1  0
2L53 1 271 2 31 39<0.0010.003
2L-3L1 121 10 14<0.0010.174
2L-6L  1  0
3L1  1  6  20.1530.091
2L-4L  1  0
3L-4L  3  2  3<0.001
4L1 1 10  1 1 16 14<0.0010.317
3L-5L  1  0
4L-5L  21  6  30.0190.091
4L-6L  2  2  20.007
5L2  2  20.007
5L-6L  211 11  40.0350.174
6L 3 19 3 38 25<0.0010.012
Total992011420104804010272280<0.001<0.001
  • a Numbers within each column are the number of ESTs with significant matches between the wheat consensus bin and the rice chromosome.

  • b Binomial probability of finding the observed number of ESTs in the rice chromosome showing the greatest colinearity in wheat.

  • c Binomial probability of finding the observed number of ESTs in the rice chromosome showing the second greatest colinearity.

  • Underlining indicates rice chromosomes with greatest colinearity with each wheat consensus bin.