QTL detected in the testcross experiment

TraitChromosomeFlanking markersLODaAllelePVE
Macrohairs 2Cb1 umc259b 5.075.4Chalco3.9
 4Lumc126b umc66a 2.693.9Balsas2.0
 5Sumc107b bnl4.36 8.117.3Chalco7.2
 9Lumc192 umc9543.8918.5Chalco46.0
10Lumc64 umc259a 4.785.5Chalco4.0
Pigment coverage 2Cumc259b umc255 5.71 0.93Chalco12.6
 3Lumc63 csu25a10.05 0.88Chalco25.2
10Lbnl7.49a 3.20 0.52Chalco8.9
Pigment intensity 3Lumc63 csu25a4.4 0.61Chalco13.7
 4Lumc126b umc66a6.3 0.60Chalco14.0
  • a The LOD curve is still rising at the terminal marker (see Figure 2).

  • QTL positions are reported by chromosome with S and L indicating cytologically defined short and long arms and C denoting centromeric, as well as by the markers on each side of the LOD peak with the closer marker underlined. The peak LOD score, additive effect estimate listed as a trait unit contribution, parental source of the allele, and percentage of the phenotypic variance explained are listed for each QTL. The threshold LOD values for the three traits were 2.64, 2.62, and 2.53, respectively.