TABLE 2

Lineage-specific divergence for Acp genes and non-Acp genes from D. mauritiana, D. sechellia, and D. simulans

Silent divergenceReplacement divergence
LocusD. simulansD. mauritianaD. sechelliaD. simulansD. mauritianaD. sechellia
Acp genes
 Acp26Aa0.00000.01780.01240.00480.02000.0094
 Acp26Ab0.04230.04920.09740.00560.00400.0150
 Acp290.04210.03060.04430.00600.01610.0070
 Acp360.01640.01870.01360.01710.01460.0042
 Acp530.00000.02880.01760.01340.00450.0039
 Acp76A0.08940.03320.06850.02980.00340.0056
 Acp62F0.03330.03780.00000.01040.00760.0185
Non-Acp genes
 Adh0.01490.05440.04860.01490.05440.0486
 janA0.08380.00000.07510.00000.00390.0002
 janB0.00010.00000.00010.00740.00000.0114
 ase0.00030.00630.00200.00000.00140.0017
 ci0.00120.01820.00780.00200.00050.0007
 est60.03140.01730.04640.00300.00670.0070
 per0.04720.09370.07630.00070.00000.0014
 rel0.04740.00000.01830.00010.00000.0001
 yp20.01220.01050.00980.00000.00230.0012
 z0.00750.00770.00750.00000.00000.0000
 Zw0.03800.00000.05650.00380.00000.0010