TABLE 2

Polymorphism and divergence of 95 loci arranged by linkage group

LocusLengthnNo. of segregating sites π DDiv
LG-A
17183152300.00 a 2.84
14322702610.28–1.1561.85
05813412720.99–0.7450.00
06882462720.60–1.5121.22
14333002700.00 a 0.33
14212832700.00 a 1.42
12333032610.70–0.3110.59
19382792300.00 a 0.36
02894002511.201.3471.03
11384222700.00 a 2.61
LG-B
10283202730.69–1.7341.83
16752822000.002.06
12241652412.611.0270.30
14762003035.220.8901.14
007515925411.221.8210.91
13822142311.880.8342.26
12531862823.800.7830.64
18011782310.49–1.1610.56
07742982400.00 a 0.34
06692692000.00 a 0.00
19442292210.76–0.6411.31
LG-C
08783691510.36–1.1592.17
08974502510.34–0.6980.64
10593372710.22–1.1541.19
04463962510.20–1.1581.26
08513862632.881.0130.36
17602982600.00 a 1.34
08743522400.00 a 0.49
00332882778.900.7331.15
00624072666.602.0970.40
17773072500.00 a 0.00
00883422711.421.3992.67
LG-D
14602372600.00 a 0.43
07253202300.00 a 0.63
04873762483.68–1.1361.35
18951232700.00 a 0.00
17732972711.060.3361.23
10474092700.00 a 0.75
11042522524.132.0901.00
14363022643.39–0.0600.91
13103882743.050.3750.68
07473042510.50–0.6983.63
01612792710.27–1.1503.60
13793242634.792.3870.19
LG-E
16543422610.43–0.7140.29
05442001800.00 a 0.00
18233091900.00 a 2.27
11013132244.981.1800.07
16472922622.881.2913.66
15492211412.241.1210.51
03183311953.96–0.2620.36
13963072610.880.0542.40
LG-F
09074102400.00 a 1.95
08712472610.31–1.1560.41
14892822610.27–1.1560.36
04553082520.76–1.2146.27
13541872111.38–0.1330.01
01763862710.19–1.1540.78
01934412741.69–0.7421.27
16012172649.032.3240.42
14463201910.33–1.1652.19
105643620108.090.8780.29
14452912168.081.2902.17
LG-G
10572882421.48–0.4440.36
01223032233.090.3520.57
11403322622.451.1781.55
12293702611.271.3030.30
18662652641.16–1.8871.88
1905334251410.90–0.0630.96
03472782500.00 a 1.44
15054232664.260.4340.53
LG-H
08603672610.21–1.1563.68
06162612610.29–1.5560.38
14642732023.511.6391.29
12482102611.01–0.3110.00
0640375281515.491.6779.80
12493472751.26–1.8560.28
05433762665.811.1531.05
09143132310.28–1.1613.83
1218330261312.170.6090.88
LG-I
03553412500.00 a 0.88
01424222744.432.1170.35
07423852400.00 a 0.00
12363211910.33–1.1651.87
16841592941.73–1.8890.53
07033472710.760.0170.29
00272532400.00 a 0.40
LG-J
08112132600.00 a 0.48
07163592775.290.1360.95
05011732723.030.0221.99
040234525128.50–0.2620.75
00673082720.48–1.5120.63
05404092132.790.9730.53
063937227124.47–1.5551.32
11082972700.00 a 0.67
Total29,1862382.25–0.0011.18

n, sample size (chromosomes); π, nucleotide diversity (Nei 1987) × 1000; D, Tajima's D (Tajima 1989); Div, net nucleotide divergence (Nei 1987) between S. bicolor and S. propinquum × 100.

  • a D could not be calculated because there was no variation.