TABLE 5

Haplotypes defined by variant sites in subregions of Msn and Alas2 and their frequencies among 120 African individuals

Polymorphic sites
Haplotype I.D.Msn 837Msn 850Msn 1046Msn 1094Msn 1312Msn 1412Msn 1414Alas2 2947Alas2 3203Alas2 3416No. of individuals
GAGGTCCCG
C1..........24
C2......G...4
C3A.........1
C4...C......1
D1..A.C.....39
D6..A.C..T..1
E1........TT18
E4.G......TT1
E5......G.TT1
F1..A.C...TT6
G1..A.C...T.11
H1........T.11
H2.G......T.1
H3.....G..T.1
Pan....C...T.1

Haplotypes are grouped into six types on the basis of intermediate-frequency polymorphisms at sites Msn 1046, Msn 1312, Alas2 3203, and Alas2 3416. Consensus sequence is shown at the top. Dots indicate identity with the consensus sequence.