Marker-QTL phase | Marker genotype | Q_{k}q_{k}Q_{k}_{+1}q_{k}_{+1} | Q_{k}q_{k}q_{k}_{+1}q_{k}_{+1} | q_{k}q_{k}Q_{k}_{+1}q_{k}_{+1} | q_{k}q_{k}q_{k}_{+1}q_{k}_{+1} |
---|---|---|---|---|---|
Two coupling markers | |||||
Combination 11 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 1 | 0 | 0 | 0 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 1– θ_{1} – θ_{2} | θ _{2} | 0 | θ _{1} | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | θ _{1} | 0 | θ _{2} | 1 – θ_{1} – θ_{2} | |
m_{u}m_{u}m_{u} _{+} _{1} m_{u} _{+} _{1} | 0 | 0 | 0 | 1 | |
Combination 12 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 1 | 1 | 0 | 0 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | θ _{2} | 1 – θ_{1} – θ_{2} | θ _{1} | 0 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | θ _{1} | 1 – θ_{1} – θ_{2} | θ _{2} | |
m_{u}m_{u}m_{u} _{+} _{1} m_{u} _{+} _{1} | 0 | 0 | 0 | 0 | |
Combination 21 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 0 | 1 | 0 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | θ _{2} | θ _{1} | 1 – θ_{1} – θ_{2} | 0 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 1– θ_{1} – θ_{2} | θ _{1} | θ _{2} | |
m_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 0 | 1 | 0 | 0 | |
Combination 22 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 0 | 0 | 1 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | θ _{1} | 0 | θ _{2} | 1 – θ_{1} – θ_{2} | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 1 – θ_{1} – θ_{2} | θ _{2} | 0 | θ _{1} | |
m_{u}m_{u}m_{u} _{+} _{1} m_{u} _{+} _{1} | 1 | 0 | 0 | 0 | |
Two repulsion markers | |||||
Combination 11 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 1 – θ_{1} – θ_{2} | θ _{2} | 0 | θ _{1} |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 1 | 0 | 0 | 0 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 0 | 0 | 1 | |
m_{u}m_{u}m_{u} _{+} _{1} m_{u} _{+} _{1} | θ _{1} | 0 | θ _{2} | 1 – θ_{1} – θ_{2} | |
Combination 12 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | θ _{2} | 1 – θ_{1} – θ_{2} | θ _{1} | 0 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 0 | 1 | 0 | 0 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 0 | 1 | 0 | |
m_{u}m_{u}m_{u} _{+} _{1} m_{u} _{+} _{1} | 0 | θ _{1} | 1 – θ_{1} – θ_{2} | θ _{2} | |
Combination 21 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | θ _{2} | θ _{1} | 1 – θ_{1} – θ_{2} | 0 |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 0 | 0 | 1 | 0 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 0 | 1 | 0 | 0 | |
m_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 0 | 1 – θ_{1} – θ_{2} | θ _{1} | θ _{2} | |
Combination 22 | M_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | θ _{1} | 0 | θ _{2} | 1 – θ_{1} – θ_{2} |
M_{u}m_{u}m_{u} _{+1} m_{u} _{+1} | 0 | 0 | 0 | 1 | |
m_{u}m_{u}M_{u} _{+1} m_{u} _{+1} | 1 | 0 | 0 | 0 | |
m_{u}m_{u}m_{u} _{+1} m _{u} _{+1} | 1 – θ_{1} – θ_{2} | θ _{2} | 0 | θ _{1} |
θ1 = r_{k1}/r_{u}, θ_{2} = r_{k2}/r, where r_{u}, r_{k1}, and r_{k2} are the recombination fractions between markers and , marker and QTL , and QTL and , respectively. Double crossover is ignored.