TABLE 2

Patterns of nucleotide polymorphism and divergence at the RPP13 locus of A. thaliana

TotalSynonymousNonsynonymous
Entire gene
    No. of sites2343528.21814.8
    Segregating sites32479245
        π 0.0450.0490.044
        Ka 0.10.150.089
    Tajima's D0.092 (NS)
First part of gene (excludes LRR)
    No. of sites1608356.11251.9
    Segregating sites1194376
        π 0.0230.0410.018
        K 0.0740.150.058
    Tajima's D0.41 (NS)
Second part of gene (includes LRR)
    No. of sites735172.1562.9
    Segregating sites20536169
        π 0.0880.0620.096
        K 0.160.160.16
    Tajima's D–0.32 (NS)

NS, not significant.

  • a Divergence relative to RPP13 ortholog from A. arenosa (Arenl).