TABLE 2

Synonymous (above diagonal) and nonsynonymous divergence values (below diagonal) between A. lyrata S-domain Aly sequences and those of potentially orthologous A. thaliana S-domain kinases

LocusAccession
nos.
Length of
sequencea
Aly3Aly7-Aly8Aly9Aly10.1Aly10.2Ark1Ark2Ark3Ats1
Aly3AY1867527010.9451.3830.7351.3801.4561.3801.0970.9360.637
Aly7-AY186753-48620.494>21.469>2>2>2>21.9551.721
Aly8AY1867557720.3040.4800.8490.3540.3800.6480.5110.3050.884
Aly9AY1867569180.4450.5010.4990.7210.6840.9940.7910.8650.176
Aly10.1AY186757-609380.3920.5210.1870.5350.1590.3110.2750.4820.877
Aly10.2AY1867617130.4160.5860.1880.5380.1240.4030.1920.4521.020
Ark1 (chromosome 1)M802380.3670.4620.2260.4050.0670.1590.2930.5270.961
Ark2 (chromosome 1)AY0457770.3940.5170.2210.4140.1320.0490.1120.4950.822
Ark3 (chromosome 4)AL0311870.2830.3960.0320.3910.1820.2130.1780.1720.867
Ats1 (chromosome 3)S849210.4190.4700.3900.1190.5020.4870.4230.4160.379
  • The divergence values involving A. lyrata sequences are means using all sequences obtained from each of the Aly loci and were calculated by the method of Nei and Gojobori (1986) with Jukes-Cantor correction. Divergence values between the putative A. lyrata genes and their A. thaliana orthologs are underlined.

  • a The column of sequence lengths gives the longest sequence available for each locus. For comparisons with the A. thaliana sequences, only the portions of sequences available from both species were used, so that the lengths are not given separately for these loci.