TABLE 3

Number of replicates (out of 100) in the likelihood analysis comparing M1 (neutral) and M2 (selection)

Simulation parametersAnalysis under M2
θSρSignificant at 5 (1)%Embedded Image Significant at 5 (1)% and Embedded Image
0.01102 (0)452 (0)
0.0110.0174 (61)10074 (61)
0.1102 (2)540 (0)
0.110.0180 (71)9980 (71)
  • Data sets of 30 sequences were simulated under M1 (with ω0 = 0 and ω1 = 1 in equal proportions). Numbers of replicates significant at 1% are in parentheses.