TABLE 4

The variance, Var(Sn), of Sn

ν + ρ = 8ν + ρ = 32:
m = 1, Homom = 4, Homom = 1, Hetm = 1, Homo
λ/m σ 20:84:40:84:40:84:40:3216:16
10163.0117.0162.3117.7167.0112.7140.374.78
10–4153.5117.7136.6111.4172.6114.3141.971.83
5 × 10–3151.8103.8139.4102.5146.6109.0133.174.83
40124.2100.9114.5109.9136.4107.3106.771.33
10–4122.1103.7111.4109.9127.8108.192.8665.90
5 × 10–3120.8101.196.12104.2118.0110.090.5064.36
160110.3105.5105.9104.6107.696.5874.4866.15
10–4111.3106.2102.5106.2104.8104.570.9565.31
5 × 10–3107.7105.598.8100.1100.7101.170.9863.96

Sample size is n = 20 and θ = 10. The expectation of Sn is 38.48. Above each column is shown the values of ν and ρ as ν:ρ; Homo, rate homogeneity; Het, rate heterogeneity (ζ = 1). A total of 1000 replicates were obtained for each entry. The variances for 8:0 and 32:0 (pure homogeneous recombination) are 95.45 and 66.21, respectively, obtained from simulation of 1000 replicates.