TABLE 2

Distribution of SNP in 16 TcMSH2 haplotypes identified in 13 T. cruzi strains analyzed

SNP positions
111111111222222222222
666778899000122223334
557577914567412793680
086121296799034443376
Haplotype strains
Haplogroup A
    Colombiana, RBI, D7 C AA A CTGGA T C A G T C AAGGC G
Haplogroup B
    115b, 167a, 226, 231, Cl-BrenerGA G GC C G T ACCCGCG G A A GCA
Haplogroup C
    JG, 1005GAAG T TAG G CCC A CGA C G A CA
    115a, 167bGAAG T TGG G CCC A CGA C G A TA
    239aGGAG T TGG G CCC A CGA C G A CA
    239bGAAG T TGG G CCC A CGA C G A CA
    577GAAG T TGG G CTC A CGA C G A CA
    593GGAG T TGG G CTC A CGA C G A CA

The informative sites specific for each haplogroup are shown in boldface type. Nucleotide numbers for the SNP positions shown above correspond to nucleotide position for TcMSH2 gene described by Augusto-Pinto et al. (2001).