TABLE 1

Backward transition rates in the two-locus model

Present state
EventA1B1 in kA1B2 in kA2B1 in kA2B2 in k
Migration to patch lEmbedded Image Embedded Image Embedded Image Embedded Image
Mutation to A1B1NAEmbedded Image Embedded Image 0
Mutation to A1B2Embedded Image 0NAEmbedded Image
Mutation to A2B1Embedded Image NA0Embedded Image
Mutation to A2B20Embedded Image Embedded Image NA
Recombination with A1B1ŷ1,kρ/2ŷ1,kρ/2ŷ1,kρ/2See below
Recombination with A1B2ŷ2,kρ/2ŷ2,kρ/2See belowŷ2,kρ/2
Recombination with A2B1ŷ3,kρ/2See belowŷ3,kρ/2ŷ3,kρ/2
Recombination with A2B2See belowŷ4,kρ/2ŷ4,kρ/2ŷ4,kρ/2
Recombination in A1B1/A2B2ŷ4,k (1 - d)ρ/2Embedded Image Embedded Image ŷ1,k(1 - d)ρ/2
Recombination in A1B2/A2B1Embedded Image ŷ3,k(1 - d)ρ/2ŷ2,k(1 - d)ρ/2Embedded Image
Coalescence (per pair)Embedded Image Embedded Image Embedded Image Embedded Image
  • NA, not applicable.