TABLE 2

The effect of recent bottlenecks of severity ϕ (the probability of coalescence during the bottleneck for a pair of chromosomes) on genealogical correlations for a sample of n = 50 chromosomes (from 106 coalescent simulations)

ϕt2/Var(t)ρij,ijρij,ikρij,klEmbedded Image
0.010.01.00.3190.0850.0580.25
0.110.00.790.2650.0530.0300.26
0.210.00.640.2600.0460.0230.32
0.510.00.330.3160.0860.0450.62
  • The last column indicates the average value of r2 between sites at which the rarer allele has a frequency of at least 0.1.