TABLE 2
The effect of recent bottlenecks of severity ϕ (the probability of coalescence during the bottleneck for a pair of chromosomes) on genealogical correlations for a sample of n = 50 chromosomes (from 106 coalescent simulations)
| ϕ | R̄ | t2/Var(t) | ρij,ij | ρij,ik | ρij,kl |  |
|---|---|---|---|---|---|---|
| 0.0 | 10.0 | 1.0 | 0.319 | 0.085 | 0.058 | 0.25 |
| 0.1 | 10.0 | 0.79 | 0.265 | 0.053 | 0.030 | 0.26 |
| 0.2 | 10.0 | 0.64 | 0.260 | 0.046 | 0.023 | 0.32 |
| 0.5 | 10.0 | 0.33 | 0.316 | 0.086 | 0.045 | 0.62 |
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The last column indicates the average value of r2 between sites at which the rarer allele has a frequency of at least 0.1.