TABLE 1

Sampled SNPs

Coding nonsynonymous SNPs (cns)Coding synonymous SNPs (cs)Noncoding SNPs near genes (nc)
WIAFGeneLocationpnWIAFGeneLocationpnWIAFGeneLocationpn
10547CYP216p2118210522AHCUnk.28610561GRLUnk.186
10549FSHRchr238210525ARchr218410562PTHUnk.386
10554GNRHR8p2138610529CYP11B1Unk.38410620GH117q22186
10557DRL5q3118610540CYP17Unk.38010650HSD3B2Unk.282
10568CYP11B1Unk.18610548FSH11p1338610656IGF1Unk.184
10591GH117q2218610552GHRUnk.38610657IGF211p15180
10605GHR5p1318610555GNRHR8p2118610660PC1Unk.382
10624CYP11AUnk.18610560GRL5q3137810695PACE15q25382
10625FSHUnk.18610563PTHUnk.28610700PTHLHUnk.386
10638CYP11B28q2138610566CGAUnk.28210762DRD211q23374
10651IGF1Unk.18610582CYP216p2118610770NGFB1p13374
10667SHBG17p1328610614FSHRchr218610778COMT22q11370
10726HSD3B21p1318610637CYP11B28q2138610843HTR1AUnk.378
10753BDNF11p1337210658PACE15q2538010849HTR1DB6q13278
10780DRD33q1337410668SHBG17p1318610857SLC6A1Unk.372
10791COMT22q1137010724PRL6p2218610864SLC6A4Unk.372
10793DBH9q3427010733PC1Unk.18610900HTR2AUnk.174
10800NGFB1p1337410759DRD211q2337410972HCF222q112104
10801ADORA222q1117410766DRD54p1637411029HMGCRUnk.1114
10826DRD54p1627410768GRIN1Unk.37411078ANX3Unk.2104
10842NTRK1Unk.17410773NTRK1Unk.37411220PAI218q211104
10846HTR1D1p3617810792COMT22q1137011237LIPCUnk.1106
10862SLC6A4Unk.17410803DRD15q3517411346F51q231108
10865THUnk.37410827GAP43Unk.17011438GABRB1Unk.238
10870HTR1E6q1417410848HTR1DB6q1337411490TBXAS1Unk.234
10879CNTF11q1217410853HTR2AUnk.37411566THP03q27328
10898HTR2AUnk.27610855HTR5A7q3627811576F10Unk.138
10949CETPUnk.311410856NT312p1337213040CYP216p21182
10952F211p11112810859SLC6A3Unk.15813068DYP11B28q21356
10958F2RUnk.110610866THUnk.27813073CYP11B1Unk.270
10960F3Unk.18610869HTR1E6q14174
10971HCF222q11110610888SLC6A1Unk.178
10975HMGCRUnk.111410895HTR1DUnk.174
11004TFPIUnk.110010897HTR1EL3p12174
11020CLanalogUnk.17610904HTR6Unk.172
11030ITGA2B17q21111210945AT31q233106
11033ITGB3Unk.110610962F51q232126
11035LDLRUnk.112610970HCF222q111106
11036LPL8p22112610981LCAT16q221128
11041PTAFRUnk.111410996LDLRUnk.3126
11062F51q23110810997LPL8p222126
11070FGAUnk.310810998PROC2q133108
11071FGBUnk.310811003TBXA2R19p133112
11074PCIchr14210211009ITGB3Unk.3106
11082APOD3q26110811017CETPUnk.1114
11085F13A1Unk.110811022CLanalogUnk.276
11102F11Unk.110811025F211p111126
11117F71q31110411027F2RUnk.1106
11179F13B1q31110811031ITGA2B17q212112
11200ANX3Unk.110811045F10Unk.3104
11203F10Unk.110811048F11Unk.3106
11215LIPCUnk.310411051F13A1Unk.2108
11227SELP1q23110611056F13B1q313106
11236TBXAS1Unk.110611067F713q342108
11294VLDLRUnk.110611079ANX3Unk.1108
11301PAI2Unk.19611099APOD3q261108
11304GP1BA17p1219811193FGA4q281108
11311MPLUnk.110411207FGBUnk.1106
11325CD36Unk.19011216LIPCUnk.3106
11339PAI17q21110611218PAI17q211106
11224PROS13p113106
11232SELP1q23398
11241VLDLRUnk.1106
11244PAI218q21198
11326GP93q21186
11332TBXAS17q321106
11431GABRB1Unk.140
11449HTR1A5q11228

The three major columns represent cns, cs, and nc sites, respectively. The five minor columns represent, from left to right, WIAF, Whitehead Institute/Affymetrix identifier dbSNP ID; gene name; genomic location if known; p, frequency category (1 = 0–5%, 2 = 5–15%, 3 = 15–50%); and n, number of chromosomes surveyed. Unk., unknown.