Mutation model | 4N_{e}r | LPT_{θ=0.01} | LPT_{θ=0.1} | LPT_{θ=0.5} | r^{2} | G4 | |
---|---|---|---|---|---|---|---|
Infinite sites | 0 | 0.053 | 0.057 | 0.058 | 0.046 | 0.018 | 0.019 |
Hypermutable | 0 | 0.025 | 0.045 | 0.055 | 0.019 | 0.030 | 0.015 |
Complex | 0 | 0.048 | 0.060 | 0.061 | 0.038 | 0.027 | 0.031 |
Finite sites | 0 | 0.041 | 0.052 | 0.053 | 0.049 | 0.051 | 0.046 |
Infinite sites | 10 | 0.958 | 0.931 | 0.447 | 0.783 | 0.797 | 0.796 |
Hypermutable | 10 | 0.969 | 0.957 | 0.560 | 0.856 | 0.740 | 0.717 |
Complex | 10 | 0.969 | 0.958 | 0.890 | 0.838 | 0.790 | 0.767 |
Finite sites | 10 | 0.824 | 0.849 | 0.834 | 0.712 | 0.514 | 0.393 |
A total of 1000 data sets were simulated for each set of mutation models and combination of parameter values. LPT, likelihood permutation test; r^{2}, correlation of r^{2} with distance; , correlation of with distance; G4, sum of distances between incompatible pairs.