TABLE 4

Alignable polymorphic sites

Site coordinate (consensus)Homolog coordinate (identity)Rare variant/polarityFreq
D. melanogaster: six sites
4612 (C)1027a (C)A/derived11
4786b1200aΔ(26 bp)/derivedc4
5134 (G)1610a (G)T/derived6
5195 (C)1666a (C)T/derived10
52721744Δ(T)/derived12
5375 (8T)4484 (8T)▵(T)/derived1
D. simulans: five sites
738 (T)4378a (T)C/derived1
2801 (T)1350 (T)C/derived1
4541 (T)5433 (T)C/derived1
4569 (T)5460 (T)A/derived2
48655845Δ(11 bp)/derived14
  • a Homolog found within HB-like element insertion.

  • b Entries without consensus do not exhibit the insertion or deletion corresponding to the rare variant.

  • c Δ indicates deletion, ▵ indicates insertion.