TABLE 3

D. simulans polymorphic sites

11222244444
2789689923558
8366802593466
3857813899195
ConsTGATTTTTT
s4...GG.......Da
s6...GG........
s8...GG........
s10...GG........
s28...GG........
s37...GG........
s38...GG........
s45...GG........
s53...GG........
s62...GG........
s20c...GG........
s49cib...........D
s57i...........D
s23ci........Ic...
s26ci........I...
s33i........I..D
s34i........I..D
s44i........I..D
s58i........I..D
s64i........I..D
s71i........I..D
s82i........I..D
s83i........I..D
s79i........I.AD
s39i........I.AD
s14i..GG...CI..D
s12........C....
s48c........C....
s18c........C.C..
s24c........C....
s31c.....C..C....
s80c..A.....C....
s40c.C....Cdd.I...
Freq151112121117141214
eTypennnnnnnnnnrsn
  • See Table 2 legend. All D. simulans lines were isofemale without special effort made to extract fourth chromosomes. Lines labeled “c” were analyzed using cloned long PCR products, rather than single-fly genomic DNA, as template.

  • a 11-bp deletion.

  • b Single-base insertion.

  • c 20-bp insertion.

  • d Single-base deletion.

  • e Site type: n, noncoding; r, replacement; s, synonymous.