Level of homology between gene pairs
| Section compared | Length (bp) (first gene/second gene) | Indels | % change | Codonsa (S/N) |
| Probe 6 gene pr6(−) vs. pr6(+) | ||||
| Codingb | 2166/2183 | 3 | 1.6 | 18/15c |
| 3′ UTR | 528/438 | 4 | 5.6 | NA |
| Mta2 gene (autosomal gene vs. mt+ pseudogene) | ||||
| 5′ UTR | 179/180 | 1 | 5.0 | NA |
| Introns | 646/656 | 5 | 3.4 | NA |
| Coding | 1032/1025 | 1 | 2.0 | 10/9 |
| 3′ UTR | 659/720 | 1 | 3.3 | NA |
| Mta3 gene (autosomal gene vs. mt+ pseudogene) | ||||
| 5′ UTR | 204/204 | 0 | 3.4 | NA |
| Intron | 360/330 | 4 | 4.7 | NA |
| Coding | 486/486 | 0 | 1.0 | 3/2 |
| 3′ UTR | 1114/1129 | 6 | 4.6 | NA |
| Ezy2 gene (mt+ gene vs. mt pseudogene) | ||||
| 5′ UTR | 341/322 | 3 | 3.1 | NA |
| Introns | 2484d/1978 | 29 | 5.2 | NA |
| Coding | 2436/2439 | 14 | 3.8 | 15/66 |
| 3′ UTR (part) | 303/298 | 10 | 5.4 | NA |
| YptC4 gene (137c vs. S1C5e) | ||||
| Intron 6 | 485/480 | 2 | 3.3 | NA |
| Gp1 gene (CC-621 vs. S1C5f) | ||||
| Introns | 300/305 | 2 | 3.7 | NA |
| Coding | 488/488 | 0 | 1.6 | 4/4 |
↵a Number of codons that contain base pair changes, shown as a pair of numbers−the first is the number of changed codons that are synonymous (S); the second is the number of nonsynonymous (N) codons.
↵b The coding portion is defined as the longer coding region of the pr6(−) allele.
↵c 12 synonymous changes before the frameshift, 6 after; 6 nonsynonymous changes before the frameshift, 9 after.
↵d The internal duplication in the mt+ gene was scored as a single indel within an intron.
↵f Our unpublished data.