TABLE 5

Average proportion of error types 1 and 2 in Example 3, when all loci have four or eight equifrequent alleles

Pairwise likelihoodLikelihood
SamplePopulationSamplePopulation
naConfigurationp(E1)p(E2)p(E1)p(E2)p(E1)p(E2)p(E1)p(E2)
410, 10, 10, 10, 100.2730.0240.2280.0440.5160.1010.4960.099
80, 0, 0, 0, 00.1110.00020.0440.00050.0140.0020.0520.003
420, 10, 10, 5, 50.5470.0220.3030.0390.6700.0960.6780.096
820, 10, 10, 5, 50.2660.00060.0320.00040.0140.0010.1030.004
430, 5, 5, 5, 50.4970.0220.1060.0420.3090.0940.2920.089
830, 5, 5, 5, 50.4830.00060.0120.0020.0320.0020.0620.004

p(E1) is the average proportion of errors of the first type;p(E2) is the average proportion of errors of the second type. na, number of alleles; sample, using sample allele frequencies; population, using population allele frequencies.