TABLE 1

Characteristics of FARE1 and FARE2 elements

Identity (%)aChromosome location
ElementSize (kb)L-endR-endDirect repeatbNo.Accession no.L-endc R-endc
FARE1.11.19496CTTTTATTT/CTTTTATTT2AC00704830,28131,402
FARE1.2d0.59092CATGCAATA/CATGCAATA2AC00596710,96311,403
FARE1.30.68592aaccAATAA/tttaAATAA5AB00905468,28167,659
FARE1.40.79695TAACTTATT/TAACTTATT2AC00605350,67651,420
FARE1.50.99596AAACTAAAa/AAACTAAAt1AC0044735,8785,011
FARE1.60.99595ATATTAAAA/ATATTAAAA2AC0062177,7268,638
FARE1.71.09394aAAAgGTAT/tAAAaGTAT4AF07627410,7169,692
FARE1.81.09596TTACAATTA/TTACAATTA3AP00073659,85258,827
FARE1.91.09694TcccTTTAA/TtatTTTAA4AC00233069,16768,130
FARE1.111.19693AAACAAAAA/AAACAAAAA5AB00670741,23442,309
FARE1.121.19592TTTATTAAA/TTTATTAAA2AC0070632,4591,379
FARE1.131.19589TATAAATAA/TATAAATAA4AL03552629,36330,475
FARE1.141.19292GATTATATa/GATTATATt4AL11738629,55528,426
FARE1.151.19292GATTATATA/GATTATATA4AL11738612,25111,119
FARE1.181.28893AAAATTCTa/AAAATTCTg4AF07289733,00531,833
FARE1.191.29194aAAAAtAAT/tAAAAaAAT5AB02303743,37444,529
FARE1.201.29195Not detected1AC00231110,85812,025
FARE1.211.29495AATAATCAA/AATAATCAA5AC00625912,77811,591
FARE1.241.58892AATACAATT/AATACAATT5AB01339325,57824,110
FARE1.251.88791TTGAGAATT/TTGAGAATT5AB02563820,59322,345
FARE1.261.98694ATAAACAAA/ATAAACAAA2AC00726742,02843,882
FARE1.271.98791ATATTTTTG/ATATTTTTG2AC00643647,73249,627
FARE1.281.98693CATTTTAAA/CATTTTAAA3AB01811470,03368,106
FARE1.302.08493AATAATATA/AATAATATA2AC00726741,77039,735
FARE1.312.68794Not detected2AC00642947,33944,692
FARE1.325.98592ACCcATTTT/ACCaATTTT2AC00629821,81615,962
FARE1.336.99291AATTATAAA/AATTATAAA5AB01687734,16441,014
FARE1.3413.09595ggTTTTAAA/tcTTTTAAA2AC00692061,14548,170
FARE2.18.59997TATTATTAT/TATTATTAT2AC0062178,78217,240
FARE2.312.58487TTTgTTTTt/TTTtTTTTg4AC00626643,02630,488
FARE2.615.49794TTGTTTTTT/TTGTTTTTT3AL09686017,3851,990
FARE2.715.59696AAAGAATTA/AAAGAATTA2AC00629845,02929,539
FARE2.815.59492Not detected2AC00719751,80836,269
FARE2.915.69497TTAATTTTT/TTAATTTTT2AC00721124,13039,775
FARE2.1015.89698TTAAGACAA/TTAAGACAA2AC00593664,31880,132
FARE2.1116.79398ATaAAAATA/ATgAAAATA2e1,2445,671
  • With the exception of FARE1.1, elements are arranged from smallest to largest according to class (FARE1 or FARE2).

  • a The percentage identity of the first 120 nucleotides of the indicated end as compared to the consensus sequence. FARE1 ends are compared to the FARE1 consensus for a given end; FARE2 ends are compared to the FARE2 consensus for a given end.

  • b Target-site duplications. Identities between repeats are indicated with underlined uppercase lettering; mismatches are indicated with lowercase lettering.

  • c The position of the terminal nucleotide for each end within the accession is indicated.

  • d FARE1.2 completely lacks the domain III region observed in other FARE1 elements and is likely a deletion derivative.

  • e FARE2.11 spans two BACs. The terminal nucleotide of the L-end is in accession no. AC006420; the terminal position of the R-end is in accession no. AC007235.