Recombination and rate heterogeneity
ρ = 0 | ρ = 1 | ρ = 4 | ρ = 16 | ρ = 64 | |
---|---|---|---|---|---|
Median | ∞ | 5.5 | 1.4 | 0.47 | 0.28 |
95% confidence | [3.2, ∞] | [0.98, ∞] | [0.62, ∞] | [0.24, 0.86] | [0.21, 0.35] |
The rate heterogeneity parameter α was estimated using PAML 2.0g (Yang 1999) for sets of 20 sequences simulated under the neutral coalescent with recombination. The Jukes-Cantor model with α=∞ was used for simulation. A total of 100 replicates were run.