TABLE 6

Likelihood values and parameter estimates for flavivirus E-glycoprotein gene (D4)

Model codeidN/dSEstimates of parameters
M0 (one-ratio)−9885.190.052ω = 0.052
M1 (neutral)−10417.470.549p0 = 0.451 (p1 = 0.549)
M2 (selection)−9775.620.063p0 = 0.383, p1 = 0.0l3 (p2 = 0.604), ω2 = 0.603
M3 (discrete)−9757.160.062p0 = 0.563, p1 = 0.327 (p2 = 0.l09),
ω0 = 0.0l0, ω1 = 0.084, ω2 = 0.247
M4 (freqs)−9935.940.189p0 = 0.434, p1 = 0.566, p2 = 0.0, p3 = 0.0,
p4 = 0.0
M5 (gamma)−9755.060.058α = 0.490, β = 7.885
M6 (2gamma)−9755.060.058p0 = l.000 (p0 = 0.000),
α0 = 0.491, β0 = 7.890, α1 = 2.007
M7 (beta)−9755.060.058p = 0.463, q = 7.110
M8 (beta&M)−9755.050.058p0 = 0.990 (p1 = 0.0l0),
p = 0.475, q = = 7.667, ω = 0.336
M9 (beta&gamma)−9755.040.058p0 = 0.986 (p1 = 0.014),
p = 0.479, q = 7.883, α = 0.865, β = 0.272
M10 (beta&gamma +1)−9755.040.058p0 = 0.988 (p1 = 0.0l2),
p = 0.479, q = 7.864, α = 0.818, β = 0.683
M11 (beta&normal> 1)−9755.040.058p0 = 0.988 (p1 = 0.0l2),
p = 0.479, q = 7.861,
μ = 2.190, α = 0.950
M12 (0&2normal>1)−9754.900.058p0 = 0.239, p1 = 0.053,
μ2 = 0.000, σ1 = 0.495, σ2 = 0.075
M13 (3normal>0)−9754.680.058p0 = 0.232, p1 = 0.052 (p2 = 0.716),
μ2 = 0.000,
σ0 = 0.000, σ1 = 4.754, σ2 = 0.070