TABLE 3

Likelihood values and parameter estimates for hominoid mitochondrial genes (D1)

Model codeidN/dSEstimates of parameters
M0 (one-ratio)−29967.860.041ω = 0.041
M1 (neutral)−30487.410.203p0 = 0.798 (p1 = 0.202)
M2 (selection)−29693.680.050p0 = 0.658, p1 = 0.0l4 (p2 = 0.328), ω2 = 0.l09
M3 (discrete)−29690.550.050p0 = 0.811, p1 = 0.182 (p2 = 0.007)
ω0 = 0.009, ω1 = 0.180, ω2 = 1.435
M4 (freqs)−29836.600.082p0 = 0.761, p1 = 0.237, p2 = 0.0, p3 = 0.0 (p4 = 0.00l)
M5 (gamma)−29698.840.047α = 0.204, α = 3.781
M6 (2gamma)−29696.670.047p0 = 0.382 (p1 = 0.618)
α0 = 36.43, β0 = 800.0, α1 = β1 = 0.0l8
M7 (beta)−29699.380.047P = 0.189, q = 3.526
M8 (beta&ω)−29690.710.050p0 = 0.994 (p1 = 0.006)
P = 0.219, q = 4.669, ω = 1.459
M9 (beta&gamma)− 29696.890.047p0 = 0.951 (p1 = 0.049)
p = 0.375, q = 13.519,
α = 1.633, β = 0.032
M10 (beta&gamma +1)−29696.890.047p0 = 0.951 (p1 = 0.049),
P = 0.378, q = 13.670, α = 2.354, β = 4.697
M11 (beta&normal> 1)−29696.890.047p0 = 0.951 (p1 = 0.049),
P = 0.377, q = 13.660, μ = 2.376, σ = 1.369
M12 (0&2normal>1)−29693.460.048p0 = 0.624, p1 = 0.054,
μ2 = 0.085, σ1 = 4.912, σ2 = 0.00l
M13 (3normal>0)−29696.730.047p0 = 0.550, p1 = 0.055 (p2 = 0.395),
μ2 = 0.051,
σ0 = 0.003, σ1 = 1.430, σ2 = 0.000