TABLE 10

Likelihood values and parameter estimates for Japanese encephalitis env gene (D8)

Model codeidN/dSEstimates of parameters
M0 (one-ratio)−6886.170.051ω = 0.051
M1 (neutral)−6974.780.168P0 = 0.832 (p1 = = 0.168)
M2 (selection)−6848.060.055P0 = 0.658, p1 = 0.014 (p2 = 0.329)
ω2 = 0.124
M3 (discrete)−6845.300.053P0 = 0.921, p1 = = 0.075 (p2 = 0.003),
ω0 = 0.022, ω1 0.382, ω2 = 1.043
M4 (freqs)−6862.140.070P0 = 0.789, p1 = 0.211, p = 0.000, p3 = 0.000 (p4 = 0.000)
M5 (gamma)−6848.000.054α = 0.198, β = 3.198
M6 (2gamma)−6845.910.054p0 = 0.940 (p1 = 0.060)
α0 = 20.464, β0 = ∞, α1 = β1 = 2.019
M7 (beta)−6848.200.053P = 0.178, q = 2.883
M8 (beta&to)−6845.380.052p0 = 0.930 (p1 = = 0.070), p = 9.666, q = 400.3(∞),
ω = 0.438
M9 (beta&gamma)−6846.650.054p0 = 0.950 (p1 = 0.050),
P = 0.515, q = 17.574, α = 30.902, β = 0.008
M10 (beta&gamma +1)−6846.660.055p0 = 0.950 (p1 = = 0.050),
p = 0.521, q = 17.414, α = 0.097, β = 1.100
M11 (beta&normal> 1)−6846.670.055(p0 = 0.950 (p1 = 0.050)
p = 0.522, q = 17.414, μ = 0.457, σ = 1.097
M12 (0&2normal>1)−6845.450.053p0 = 0.334, p1 = 0.054,
μ2 = 0.039, σ1 = 3.762, σ2 = 0.000
M13 (3normal>0)−6848.540.055p0 = 0.915, p1 = = 0.000 (p1 = 0.085),
μ2 = 0.492
σ0 = 0.020, σ1 = 29.0(∞), σ2 = 0.109