TABLE 9

Likelihood values and parameter estimates for HIV pol gene (D7)

Model codeidN/dSEstimates of parameters
M0 (one-ratio)−9619.300.196ω = 0.196
M1 (neutral)−9450.210.280(p0 = 0.719 (p1 = 0.280)
M2 (selection)−9393.560.184(p0 = 0.354, (p1 = 0.136 (p2 = 0.510)
ω2 = 0.093
M3 (discrete)−9363.570.253(p0 = 0.838, (p1 = 0.142 (p2 = 0.019),
ω0 = 0.049, ω1 = 0.849, ω2 = 4.739
M4 (freqs)−9369.100.240(p0 = 0.616, p1 = 0.318, p2 = 0.000, p3 = 0.032 (p4 = 0.034)
M5 (gamma)−9384.320.264α = 0.169, β = 0.541
M6 (2gamma)−9378.790.269(p0 = 0.422 (p1 = 0.578)
α0 = 2.108, β0 = 10.202, α1 = β1 = 0.045
M7 (beta)−9405.740.188P = 0.111, q = 0.482
M8 (beta&to)−9365.880.250(p0 = 0.975 (p1 = 0.025), p = 0.177, q = 0.963,
ω = 4.052
M9 (beta&gamma)−9378.790.269(p0 = 0.919 (p1 = 0.081),
P = 0.314, q = 2.313, α = 0.286, β = 0.013
M10 (beta&gamma + 1)−9378.790.269(p0 = 0.947 (p1 = 0.053),
P = 0.311, q = 2.216, α = 1.116, β = 0.090
M11 (beta&normal> 1)−9378.790.269(p0 = 0.946 (p1 = 0.054)
P = 0.312, q = 2.239, μ = 3.571, σ = 1.360
M12 (0&2normal>1)−9368.000.270(p0 = 0.590, (p1 = 0.203,
μ2 = 0.273, σ1 = 2.389, σ2 = 0.003
M13 (3normal>0)−9361.370.269(p0 = 0.726, (p1 = 0.033 (p2 = 0.241),
μ2 = 0.000,
σ0 = 0.046, σ1 = 4.625, σ2 = 0.652