TABLE 2

State space and notation for the model with complete linkage: haplotypes found in a hypothetical data set with 13 alleles at the A locus and 11 alleles at the B locus

A1B1, A1B2, A1B3 (i = 3)
A2B4, A2B5 (i = 2)
A3B6, A4B7, A5B8 (K = 3)
A6B9, A7B9, A8B9, A10B9 (j = 4)
A11B10, A12B10 (j = 2)
A13B11, A14B11 (j = 2)
  • In this case, I = 2, J = 3, K = 3. At the symmetric, deterministic equilibrium described in the text, the frequencies of gametes in each row containing more than one are equal. The frequency of those in the first row would be x3, those in the second row would be x2, those in the third row would be z, those in the fourth row would be y4, those in the fifth and sixth rows would be y2, and ϕ2 = ϕ3 = 1/2, ρ2 = 2/3, and ρ4 = 1/3.