TABLE 3

Core markers, sequence accession numbers, homologies, and corresponding maize bin

ProbeGenBank NumberHomologybP(N)Bin
p-tub1aX52878Maize β-1 tubulinisolated gene1.01
p-umc157G10822, G10823None1.02
None
p-umc76G10865, G10866None1.03
None
p-asg45aG10756, G10757Serine-threonine protein kinase4.3e-101.04
Rice cDNA3e-8
p-csu3aT12525, T12526None1.05
None
p-umc67G10864, G13173None1.06
None
p-asg62aG13181, G13182None1.07
None
p-umc128G10812, G10813None1.08
None
p-csu164aT12748None1.09
None
p-umc107aG10803, G10804Picea CROC-1-like protein2.8e-361.10
Arabidopsis cDNA1.2e-39
p-umc161aG10824, G10825None1.11
Arabidopsis cDNA7.7e-17
p-bnl6.32G10770, G10771None1.12
None
p-bnl8.45aG10776, G10777None2.01
None
p-umc53G10851, G10852None2.02
None
p-umc6G10855, G10856None2.03
None
p-umc34G10839, G10840None2.04
None
p-umc131G10816, G10817None2.05
None
p-umc255aG10834None2.06
Rice cDNA4.7e-21
p-umc5G10847, G10848None2.07
Arabidopsis cDNA5.8e-24
p-asg20aG10750, G10751None2.08
None
p-umc49G10845, G10846None2.09
None
p-php20581aG10795, G10796Arabidopsis teosinte branched-like protein5.6e-112.10
Arabidopsis cDNA1.1e-10
p-umc32G10837, G10838None3.01
None
p-csu32aT12669None3.02
None
p-asg24aG10752, G10753Glutaminyl-tRNA synthetase4.8e-153.03
Arabidopsis cDNA5.2e-13
p-asg48aG13183, G13184None3.04
None
p-umc102G10801, G10802None3.05
None
p-bnl5.37G10766, G10767None3.06
None
p-bnl6.16aG10768, G10769Arabidopsis unknown protein2.1e-203.07
Arabidopsis cDNA2.2e-23
p-umc17aG10828, G10829None3.08
None
p-umc63G10857None3.09
None
p-csu25aT12664Obtusifoliol 14-alpha demethylase4.8e-353.10
None
p-agrr115a4.01
p-php20725a4.02
p-umc31G10835, G10836None4.03
None
p-npi386aG10786, G10787Arabidopsis GA14.4e-124.04
Arabidopsis cDNA7.1e-9
p-agrr37aG10748, G10749None4.05
None
p-umc156aG10820, G10821None4.06
None
p-umc66G10862, G10863Lectin receptor1.1e-094.07
Rice cDNA1.3e-18
p-umc127aG13175, G13176None4.08
None
p-umc52G10849, G10850None4.09
Arabidopsis cDNA3.8e-08
p-php20608G10797, G10798None4.10
None
p-umc169aG15653, G15654None4.11
None
p-npi409aG10788, G13178None5.01
None
p-umc90aG10870, G10871None5.02
None
p-tub4aL10635Maize beta-4 tubulinisolated gene5.03
p-bnl4.36a5.04
p-csu93aT12714None5.05
None
p-umc126G10810, G10811None5.06
None
p-umc108G10805, G10806None5.07
Arabidopsis cDNA2.2e-9
p-bnl5.24aG10764, G10765None5.08
None
p-php10017G10791, G10792None5.09
None
p-umc85G10869None6.01
None
p-umc59G10853, G10854None6.02
Rice cDNA6.7e-6
p-npi393aG13180None6.03
None
p-umc65G10860, G10861None6.04
None
p-umc21G10830, G10831None6.05
None
p-umc38G10841, G10842None6.06
None
p-umc132G10818, G10819Choline kinase8.8e-126.07
rice cDNA7.7e-12
p-asg7aG10760, G10761None6.08
None
p-asg8aG10762, G10763myb-related protein9.3e-107.01
Dictyostelium cDNA9.1e-10
pasg34aG10754, G10755Methylmalonate semi-aldehyde dehydrogenase1.2e-247.02
Drosophila cDNA3.4e-16
p-asg49aG10758, G10759None7.03
None
p-umc254aG10832, G10833None7.04
None
p-umc245aG13169, G13170None7.05
None
p-umc168aG13171, G13172None7.06
None
p-npi220G10780, G10781None8.01
rice cDNA2.8e-09
p-bnl9.11G10778, G10779Leucyl-tRNA synthetase2.4e-98.02
Rice cDNA4.6e-16
p-umc124G10808, G10809Choline kinase2.4e-238.03
Mesembryanthemum cDNA7.5e-16
p-bnl7.08aG10772, G10773None8.04
None
p-bnl2.369a8.05
p-csu31aT12667, T12668None8.06
None
p-npi268G10782, G10783None8.07
None
p-npi414G10789, G10790None8.08
None
p-agrr21a8.09
p-umc109G10807, G13177None9.01
None
p-umc192aX13502Maize bronze-1Isolated gene9.02
p-umc25aX03935NDP-glucose-starch glucosyltransferase, starch granule bound (waxy1)Isolated gene9.03
p-csu147aT12740None9.04
None
p-umc95G10872None9.05
None
p-csu61aT12691None9.06
None
p-asg12aG13185, G13186None9.07
None
p-csu54aT12684Arabidopsis unknown protein1.9e-259.08
None
p-php20075G10793, G10794GASA5-like protein2.4e-3410.01
Capsicum cDNA1.2e-32
p-npi285G10784, G10785None10.02
None
p-umc130G10814, G10815None10.03
None
p-umc64G10858, G10859None10.04
None
p-umc259a10.05
p-umc44G10843, G10844None10.06
None
p-bnl7.49aG10774, G10775Homeobox protein1.4e-3610.07
Arabidopsis cDNA2.6e-18
  • a These probes are new core markers not in the original set published by Gardiner et al. (1993).

  • b Except for the cases where the clone was an isolated maize gene (i.e., derived by targeted cloning), each entry in the table lists two homologies. The first line is that found using BLASTX vs. the NCBI nr database while the second line is for TBLASTX vs. dbEST. In all cases only the match with the highest significance is shown.