TABLE 2

Bin assignments, gene functions, accession numbers, and organism matches for loci mapped on Tx303 × CO159 Immortalized F2 population

Gene matchaProbeAccession no.bLocus namesBincP valuedOrganisme
1,3-β-Glucancsu735AA143913 csu735(geb) 2.03–2.04–13 Arabidopsis thaliana
1,4-α-Glucan branching enzymep1-3sbe10 psu1a(spe), psu1b(spe) 6.02, 10.04
24-kD zeinpcc518 fl2, uat3b(fl2) 4.04, 4.02
26S proteasome ATPasecsu834W21752 csu834(mss) 5.07–5.08–46 Spinacia oleracea
26S proteasome regulatory subunit S12rgp c597 rgpc597(prs) 8.05–31 Arabidopsis thaliana
3-Deoxy d-arabino-heptulosonate 7-phosphate synthasecsu597AA661448 csu597a(dah), csu597b(dah), csu597c(dah), csu597d(dah), csu597e(dah) 4.08, 8.00–8.01, 7.04, 4.07, 8.06
6-Phosphogluconate dehydrogenasecsu262T18824 pgd1, pgd2 6.01, 3.05 Medicago sativa
6-phosphogluconate dehydrogenasecsu843W21760 pgd3 4.03–4.04–28 Medicago sativa
α-AmylaseAS-5 amy3 2.07
α-Tubulincsu272T18832 csu272a(tua), tua4 1.10, 5.01–5.02–48 Zea mays
α-Tubulincsu399W49910 csu399a(tua), tua4 1.10, 5.01–5.02–29 Picea abies
α-Tubulincsu581AA051892 tua6, csu581b (tua) 7.04, 6.05–29 Plasmodium falciparum
α-Tubulincsu662AA072439 tua4 5.01–5.02–50 Pisum sativum
α-Tubulintua1 tua1 1.10
α-Tubulintua2 tua2 1.10
α-Tubulintua3 tua3 5.01
α-Tubulintua4 tua4 5.01–5.02
α-Tubulintua5 tua5 2.07–2.08
α-Tubulintua6 tua6 7.04
ABA-ripening-inducible proteincsu725AA661453 aba2 8.06–25 Oryza sativa
Acetyl-CoA carboxylase22J umn1(acc) 2.05
Acid phosphataseIsozyme acp1 * 9.03
Acid phosphataseIsozyme acp4 * 1.11–1.12
Acyl-CoA binding proteinrgp r1908 rgpr1908a(acb), rgpr1908b(acb) 9.02–9.03, 10.04–38 Ricinus communis
Acyl-CoA binding proteincsu613AA054794 csu613(acb) 10.04–29 Ricinus communis
ADP-glucose pyrophosphorylasecsu897W21619 agp2 6.07–16 Triticum aestivum
ADP-glucose pyrophosphorylase, endosperm-60-kD subunitsh2850 sh2 3.09
ADP-glucose pyrophosphorylase, endosperm-55-kD subunitbt2 bt2 4.05
ADP-ribosylation factorcsu747AA143922 csu747a(arf), csu747b(arf) 2.06, 6.02–38 Histoplasma capsulatum
ADP-ribosylation factorcsu922W21636 csu922(arf) 8.08–56 Oryza sativa
Alanine aminotransferaserz892 rz892a(alt), rz892b(alt) 1.05, 5.03–17 Panicum miliaceum
Alcohol dehydrogenasergp c496 adh1, rgpc496b(adh), rgpc496c(adh) 1.10, 4.03, 10.03–51 Zea mays
Alcohol dehydrogenaseumc200 ald2 4.03
Aldehyde dehydrogenaseprf2a9.03
Aldolaseumc216 ald1 8.06
Aluminum-induced proteincsu359T27554 csu359(alp) 10.01–16 Triticum aestivum
Ankyrincsu81 csu81a(ank) 7.02–12 Arabidopsis thaliana
Apetalacsu137 U: csu137a(ap), csu137b(ap) 5.01, 1.10–35 Arabidopsis thaliana
Apetala 2H1100.43 gl15 9.03
Argonaute proteincsu21 csu21a(ago), csu21b(ago) csu21d(ago) 1.09, 3.09, 7.04–11 Arabidopsis thaliana
Ascorbate peroxidasecsu710AA143901 csu710a(apx), csu710b(apx), csu238b(apx), csu710d(apx), csu710e(apx), csu710f(apx) 1.03, 4.10–4.11, 6.06–6.07, 6.00, 9.05, 1.05–39 Oryza sativa
Ascorbate peroxidasecsu1192W49455 csu1192(apx) 2.00–2.01–40 Brassica napus
Ascorbate peroxidasecsu238T26938 csu238a(apx), csu238b(apx) 1.03, 6.07–25 Oryza sativa
Aspartyl-tRNA synthetase5CO1B12 uaz132a(dts) 5.03–5.04–41 Rattus norvegicus
ATP-dependent transportercsu665AA072441 csu665a(adt), csu665b(adt) 2.09, 9.01–9.02–13 Saccharomyces cerevisiae
ATP synthase β-subunitbcd828 bcd828b(atpb) 6.06–6.07–32 Triticum aestivum
ATP synthase γ-subunitcsu309W49894 csu309(atpc) 6.02–16 Pisum sativum
ATP/ADP translocatorcdo507 cdo507a(ant), cdo507b(ant) 1.01, 5.06–25 Oryza sativa
ATP/ADP translocatorcsu26 csu26a(ant) 5.06–27 Zea mays
ATP/ADP translocatorcsu899W21620 csu899a(ant), csu899b(ant) 3.09, 1.06–59 Zea mays
ATP/ADP translocatorrz273 rz273b(ant) 5.06–74 Oryza sativa
ATPase F1-subunitcsu849W21766 csu849(atpb) 8.02–8.03–58 Actinidia deliciosa
γ-Alanine pyruvate aminotransferasecdo89 cdo89(aat) 6.06–34 Rattus norvegicus
β-Alanine synthasecdo385 bas1 7.04–12 Caenorhabditis elegans
β-Fructokinasecsu926W21640 csu926(frk) 6.00–15 Beta vulgaris
β-Galactosidaserz329 rz329b(bga) 4.01–21 Asparagus officinalis
β-GlucosidaseIsozyme glu1 * 10.03
β-Ketoacyl CoA reductasegl8.08 cDNA gl8 5.05
β-Tubulintub1 tub1 1.01
β-Tubulintub2 tub2 8.03
β-Tubulintub4 tub4 5.03
β-Tubulintub6 tub6 3.06
Basal endosperm transferase proteinbet-1 betl1 2.08–2.09
Basal endosperm transferase proteinbet2 betl2 4.04–4.05
Blue light photoreceptorpAS16 std16a(blr), std16b(blr), std16c(blr) 4.05, 5.05, 7.05
bZip proteinmEMBP1 psu2(bZip) 7.02
Caffeic O-methyl-transferasemc1 bm3 4.05
Calcium-dependent protein kinaserz753 rz753(cdpk) 7.04–69 Oryza sativa
CalmodulinpZmCAL M1 ufr1(cal) 6.06
Calmodulin-binding protein5C04D02 uaz279(cbp) 4.09–63 Zea mays
Calnexincsu148 csu148b(clx) 2.04–20 Arabidopsis thaliana
Calreticulincsu1140W49439 crt2 7.02–70 Zea mays
CaMB-channel proteinrz404 rz404(ccp) 7.04–23 Nicotiana tabacum
Cap-binding proteincsu1007UW49482 csu1007(eif4F) 1.08–37 Oryza sativa
Carbonic anhydrasecsu397W49908 csu397(cah) 3.08–3.09–8 Zea mays
Carbonic anhydrasecsu869W21715 csu869(cah) 3.09–28 Zea mays
Carbonic anhydrasecsu125 csu125a(cah), csu125b(cah) 3.09, 8.05–46Hordeum
Catalase isozyme Brz508 cat1 5.03–55 Oryza sativa
cDNA J homologcsu63 csu63a(cdj), csu63b(cdj) 1.11, 4.02–4.03–48 Allium porrum
Cell division protein 48csu146 cdc48 6.02–26 Capsicum annuum
Cell division protein 48csu183T18843 csu183a(cdc48), csu183b(cdc48) 6.02, 9.04–23Synechocystis sp.
Cell wall proteinrz574 rz574b(cwp) 9.05–9.06–18 Arabidopsis thaliana
Cellulose synthasecsu567UAA051881 csu567(ces) 3.07–48 Gossypium hirsutum
Cf2.2 and Erectacsu693AA072468 csu693(lrr) 4.05–9 Cf2-Solanum pimpinellifolium, Erecta-Arabidopsis thaliana
Chalcone isomeraseCHI chi1, csh1b(chi), csh1c(csh) 1.11, 2.07, 5.00
Chalcone synthaseumc198 c2, whp1 4.08, 2.08–2.09
Choline kinaseumc124 umc124(chk) 8.03–23 Homo sapiens
Choline kinaseumc132 umc132a(chk) 6.07–12 Oryza sativa
ChitinasepCh11 uiu6(chn) 6.02
ChitinasepCh2 uiu5(chn) 6.02
Chitinaseumc157 umc157(chn) 1.02
Chloroplast RNA processingpCrp1-2 uor2(crp) 7.04
Chromosome region maintenance proteincsu527AA030709 csu527(crm) 5.00–14 Saccharomyces cerevisiae
Cin4 retroelementcsu12 csu12b(cin4), csu12d(cin4) 1.08, 2.02
Citrate synthasecdo534 cdo534a(cts) 4.09–61Populus sp.
Citrate synthasecsu324W49861 csu324a(cts) 4.09–36Populus sp.
Cold-induced proteincsu382T27570 csu382a(cld), csu382b(cld), csu382c(cld) 6.05, 8.06, 3.05–19 Brassica napus
Copper amide oxidaserz69 amo1 10.04–11 Pisum sativum
crinklypCR4c5H cr4 10.01–10.02
CRINKLY precursorcdo244 cdo244a(crp), cdo244b(crp) 10.07, 2.02–12 Zea mays
CyclinIa csh8a(cyc4) 8.08
CyclinIb csh9(cycl) 8.04
CyclinIII cyc3 6.02
Cyclinp10 csh10a(cycll), csh10b(cycll) 5.06, 3.04
Cycloartenol synthasecsu265T18827 cas1 4.10–24 Arabidopsis thaliana
Cystathionine γ-synthaserz672 rz672a(cgs) 1.04–58 Zea mays
Cystatincsu223T18803 csu223a(psei), csu223b(psei) 8.08, 3.06–17 Zea mays
Cysteine synthasecsu881UW21609 csu881(cys) 1.05–1.06–23 Zea mays
Cytochrome b5rz390U: rz390a(cyb5), rz390b(cyb5) 8.05, 8.05–38 Oryza sativa
Cytochrome b561csu428W59826 csu428(cyb561) 4.06–16 Bos taurus
Cytochrome C-reductasecsu576AA051888 ccr1 1.11–35 Solanum tuberosum
Cytochrome P450np1703 cyp7 3.05
Cytochrome P450np1710 cyp1710 4.01
Cytochrome P450np2707 cyp2707 4.01
Cytochrome P450pCYP71C1U bx4 4.01
Cytochrome P450csu618AA054799 csu618(P450) 4.01–19 Zea mays
Cytochrome P450np2611 uky1(P450) 2.06
Cytochrome P450np2708 uky2(P450) 5.03
Cytochrome P450np3712 uky3a(P450), uky3b(P450) 8.03, 6.05
Cytochrome P450phi034 cyp6 ** 7.02
Cytoplasmic malate dehydrogenasecsu580AA051891 csu580a(mdh), csu580b(mdh) 1.08, 5.03–41 Zea mays
Dehydrinumc170 dhn1 6.05
Dihydrodipoamide dehydrogenaserz244 rz244a(dia), rz244b(dia) 8.03, 3.04–43 Pisum sativum
DNA-binding activitypAS10 dba1 4.10
DNA-binding activitypAS11 std7a(dba), std7b(dba) 6.05, 8.04
DNA-binding activitypAS12 U: dba2 8.05
DNA-binding activitypAS13 U: dba3 10.07
DNA-binding activitypAS14 dba4 9.06
DNA-binding activitypAS7 std4(dba) 10.05
DNA-binding activitypAS8 std6a(dba), std6b(dba) 9.03, 6.04
DNA-binding activitypAS9 std2a(dba), std2b(dba), std2c(dba) 9.06–9.07, 5.03, 1.02
DNA-binding proteinumc107 umc107a(croc) 1.10–39 Picea
DNA polymerasecsu804W21728 csu804a(dnp), csu804b(dnp) 9.08, 1.00–6Human herpes virus
DNA J proteinrz474 rz474a(dnaj), rz474b(dnaj) 5.02–5.03, 1.08–1.09–44 Solanum tuberosum
Dormancy-regulatory proteinvp1 vp1 3.05
dTDP glucose dehydratasecsu219T18799 csu219(tgd) 9.05–25 Arabidopsis thaliana
E. coli origin of replicationpAS3 eoh1 10.03
eg1, protein kinase stage I oogenesis specificcdo920 cdo920(egl) 3.09–16 Drosophila melanogaster
Elongation factor 1Acsu226T18806 csu226a(elf1A), csu226b(elf1A), csu360(elf1A) 8.04, 6.02–6.03, 6.05–22 Malus domestica
Elongation factor 1Acsu116 csu116a(elf1A) 6.05–25 Zea mays
Elongation factor 1Acsu360T27555 csu360(elf1A) 6.05–46Forsythia sp.
Elongation factor 1Acsu575AA051887 csu575(elf1A) 6.05–131 Zea mays
Endomenbrane protein EMP70 precursorrz141 rz141a(emp70) 3.05–55 Arabidopsis thaliana
EndopeptidaseIsozyme enp1 * 6.01–6.02
Enolasecsu951W21657 csu951(eno) 10.03–10.04–58 Ricinus communis
Ent-kaurene synthase Bcsu186T18845 eks1 2.02–8 Cucurbita maxima
Ent-kaurene synthase, A-activityAn1 an1 1.08
Ent-kaurene synthase, A-activitynpi386 npi386(eks2) 4.04–12 Arabidopsis thaliana
EsteraseIsozyme e8 * 3.01
EsteraseIsozyme e4 * 3.04
EsteraseIsozyme e1 * 7.04
Eucaryotic initiation factor 5Acsu175T18836 csu175a(eif5A), csu175c (eif5A), csu175d (eif5A), csu175e(eif5A) 2.07–2.08, 5.03, 7.04, 1.11–10 Zea mays
Eucaryotic initiation factorplif4a ucr1a(eif), ucr1b(eif) 6.02, 5.03
Eucaryotic initiation factor 5Acsu154 csu154a(eif5A) 2.08–29 Phaseolus vulgaris
Eucaryotic initiation factor 5Acsu203T18787 csu175d(eif5A), csu203b (eif5A), 7.04, 2.08–32 Zea mays
Eucaryotic initiation factor 5Acsu702AA143899 csu203b(eif5A) 2.07–2.08–27 Zea mays
Eucaryotic initiation factor 5Acsu981W21687 csu981(eif5A) 10.04–8 Phaseolus vulgaris
Extensincsu355T27552 csu355(ext) 9.05–8 Solanum lycopersicum
Extensin, class 1bcd855 bcd855a(ext), bcd855b(ext) 2.03, 6.05–17 Arabidosis thaliana
Ferredoxincsu74 csu74(fdx) 4.05–16 Zea mays
Ferredoxin III precursorrz614 rz614((dx) 1.12–46 Zea mays
Ferredoxin NADP-reductasecsu961W21667 csu961(fnr) 3.05–56 Oryza sativa
Ferredoxin NADP-reductaseZm prn1L usu1a(fnr), usu1b(fnr) 1.10–1.11, 7.00–7.01
Ferripyochelin binding proteinrz995 rz995a(fbp) rz995b(fbp) 8.00–8.01, 3.04–17 Methanococcus jannaschii
FerritinFM1 fer1 4.08
Ferritincsu306W49892 csu306(fer) 10.00–18 Vigna unguiculata
Fibrillincsu393W49905 csu393(fbn) 2.04–30 Capsicum annum
Fibrillincsu653AA072431 csu653(fbn) 1.05–25 Capsicum annum
Flavonol 3-O-glucosyl-transferaseumc192 bz1 9.02
Folylpolyglutamate synthetasecsu969W21675 fpg1 10.03–10.04–10 Mus musculus
Fusca 6, signal-transduction pathway genecsu896W21618 us6 1.00–1.01–11 Arabidopsis thaliana
G-protein subunitumc194 umc194a(gpr) 1.01–1.02
General regulatory factorGRF1-GR14-12 ufg8 (grf) 10.04
General regulatory factor, 14-3-3 proteinGRF2-GR14-6 grf2 10.04
General regulatory factor, 14-3-3 proteincsu64 csu64a(grf) 2.08–2.09–19 Zea mays
Gibberellin and auxin stimulated proteinphp20075 php20075a(gast) 10.01–36 Lycopersicum esculentum
Globulinumc184 glb1, umc184b(glb), umc184c(glb), umc184d(glb) 1.09, 2.04, 8.05, 3.08–3.09
Glucan endo-1,3-β-glucosidasepGlu uiu8(geb) 3.05
Glucan endo-1,3-β-glucosidaseumc129 umc129(geb) 1.09
Glucose-6-phosphate dehydrogenasecsu350T27548 csu350(gpdh) 2.03–2.04–31 Medicago sativa
Glutamine synthetasepDP1 gln6 1.03
Glutamine synthetasepGS1535 gln4 5.07
Glutamine synthetasepGS1931 gln2 1.09–1.10
Glutamine synthetasepGS691 gln5 4.06
Glutamine synthetasepMS5 gln1 10.07
Glutaminyl-tRNA synthetasecsu674AA072448 csu674(gts) 4.08–4.09–22 Homo sapiens
Glutaminyl-tRNA synthetaseasg24 asg24(gts) 3.03–17Lupinus
Glutaredoxincsu40 csu40(grx) 2.04–23 Oryza sativa
Glutathione S-transferaseumc181 bz2 1.08
Glutathione S-transferasecsu44 csu44(gst) 3.05–40 Zea mays
Glutathione S-transferasecsu454AA011860 csu454(gst) 1.01–12 Zea mays
Glyceraldehyde-3-phosphate dehydrogenasecsu1047W49424 gpa2 10.04–12 Sinapis alba
Glyceraldehyde-3-phosphate dehydrogenasecsu140 gpa2 10.04–31 Sinapis alba
Glyceraldehyde-3-phosphate dehydrogenasecsu610AA054791 gpa2 10.04–25 Zea mays
Glyceraldehyde-3-phosphate dehydrogenaserz143 rz143a(gpc) 6.00–30 Oryza sativa
Glyceraldehyde-3-phosphate dehydrogenase, C, cytosolicumc191 gpc1 4.04–4.05
Glyceraldehyde-3-phosphate dehydrogenase, C, cytosolicumc203 gpc2 6.00–6.01
Glyceraldehyde-3-phosphate dehydrogenase, NADP+ phosphorylatingumc188 gpa1 8.03
Glycine-rich proteincsu408W59808 csu408(grp) 3.04–22 Zea mays
Glycine-rich proteincsu214T18795 csu214a(grp), csu214b(grp) 9.03–9.04, 1.03
Glycine-rich proteincsu215T18796 csu215a(grp), csu215b(grp) 3.06, 1.03
Glycine-rich RNA binding proteincsu611AA054792 csu611a(grp), csu611b(grp) 2.09, 7.01–31 Oryza sativa
Glycine decarboxylase-H proteincsu681AA072454 gcsh1 10.03–15 Mesembryanthemum crystallinum
Glycosyl transferasecsu425W59825 csu425(gct) 2.02–9 Saccharomyces cerevisiae
Golgi-associated proteincsu982W21688 csu982(goa) 1.08–52 Zea mays
Golgi-associated protein se-wap41rgp r440 rgpr440a(gap), rgpr440b(gap), rgpr440c(gap) 5.03, 7.04, 10.03–47 Zea mays
Goliath proteincsu216T18797 gol1 4.08–9 Drosophila melanogaster
Goliath proteincsu859W21775 csu859(gol) 1.03–8 Drosophila melanogaster
gos2, protein translation factor SUI1cdo59 cdo59a(gos2) 7.04–37 Oryza sativa
GTP-binding proteincdo395 cdo395a(ypt), cdo395b(ypt) 4.05, 5.06–21 Arabidopsis thaliana
GTP-binding proteincsu108 csu108(gbp) 5.02
GTP-binding proteinbcd147L: bcd147(gbp) 10.03–19 Saccharomyces cerevisiae
GTP-binding proteinrz400 rz400(gbp) 10.02–67 Lotus japonicus
GTP-binding protein, smallcsu234T18813 csu234a(gbp), csu234b(gbp) 3.05, 10.03–22 Pisum sativum
Heat shock protein 18pZmhsp 17.2M ttu1(hsp18) 3.04
Heat shock protein 705C04D01 uaz205b(hsp70), uaz205c(hsp70) 1.07, 7.03–83 Phaseolus vulgaris
Heat shock protein 70bcd1072 bcd1072a(hsp70), bcd1072c(hsp70) 5.02, 1.09–39 Spinacia oleracea
Heat shock protein 70csu179T18839 csu179a(hsp70), csu179b(hsp70), csu179c(hsp70), csu179d(hsp70) 1.03, 9.03–9.04, 8.07, 8.04–33 Pisum sativum
Heat shock protein 70csu912UW21630 csu179a(hsp70), csu912b(hsp70), csu179c(hsp70) 1.03, 3.04–3.05, 8.07–32 Zea mays
Heat shock protein 70umc206 umc206(hsp70) 8.03
Heat shock protein 82csu256T26943 csu256(hsp90) 1.06–30 Arabidopsis thaliana
Heat shock protein 82csu274T18833 csu274(hsp90) 7.02–7.03–37 Oryza sativa
heat shock protein ClpBrz87L: rz87(clp) 5.04–11Synechoccus sp.
Histone 2B1CH2B1 L: std1a(his2B1), std1b(his2B1), std1d(his2B1) 4.05, 1.07, 3.04
Histone 3csu929W21643 csu929(his3) 10.03–10.04–31 Glycine max
Histone H2A1csu666AA072442 csu666(his2A1) 6.05–27 Petroselinum crispum
Histone H2Bcsu285T18835 csu285(his2B) 9.07–18 Triticum aestivum
Homeobox, transcription factorpBK6 hox3 3.06–3.07
Homeobox, transcription factorpRB43 hox2 6.07
Homeobox, transcription factorpRB53 hox1 8.04–8.05
Homeodomain proteinbnl7.49 bnl7.49a(hmd) 10.07–43Orchid
Hydroxyproline-rich glycoproteinumc145 hrg1 2.04
Importincsu244T18817 csu244(imp) 8.03–16 Arabidopsis thaliana
Indeterminate, zinc-finger proteinp850 csh4(id1) 1.08
Indol-3-ylacetyl glucosyl transferaseiaglu msu2(iaglu) 1.09
Inorganic H-pyrophosphatasecsu921W21635 csu921a(ppp), csu921b(ppp) 1.09, 1.07–49 Hordeum vulgare
Integral membrane proteincsu142 stp1 8.03–28 Beta vulgaris
InvertaselvRI genomic ufg3a(ivr), ufg3b(ivr) 2.03, 10.05
Invertase, cell wallIJ6 ufg6(incw) 2.04
Invertase, cell wallIKS#46 incw1 5.04
Iojap1cDNA(ij) ij1 7.03
Isocitrate dehydrogenaseIsozyme dh2 * 6.07
Isocitrate dehydrogenaseIsozyme idh1 * 8.05–8.06
Isovaleryl CoA dehydrogenase precursorcdo580 cdo580b(ivd) 6.01–30 Rattus norvegicus
Ketol-acid reductoisomerasecdo1160 cdo1160a(kri), cdo1160b(kri) 8.03, 3.04–44 Spinacia oleracea
Kinase-associated acid phosphataseZmKAPP umc267(kapp) 2.06
Kinesin, light chainrz567 rz567a(klc) 5.06–33 Arabidopsis thaliana
Knotted-related homeoboxKnox1 knox1 1.00–1.01
Knotted-related homeoboxKnox11 knox11 8.05
Knotted-related homeoboxKnox3 knox3 1.10
Knotted-related homeoboxKnox8 knox8a, knox8b 1.10, 7.00
Lectin receptorumc66 umc66a(lcr) 4.07–18 Oryza sativa
Leucine tRNA synthasebnl9.11 bnl9.11a(lts) 8.02–10 Bacillus subtillus
Light harvesting chlorophyll a/b binding proteincsu1028W49418 csu1028(lhcb) 10.06–10.07–9 Chlamydomonas reinhardtii
Light harvesting chlorophyll a/b binding proteincsu460AA011865 lhcb1 3.09–24 Arabidopsis thaliana
Light harvesting chlorophyll a/b binding proteincsu466AA011871 csu466(lhcb) 9.01–9.02–35Petunia sp.
Light harvesting chlorophyll a/b binding proteincsu774AA143929 csu774(lhcb) 5.04–35 Pinus sylvestris
Light harvesting chlorophyll a/b binding proteincsu778AA143930 csu778(lhcb) 9.04–18 Pisum sativum
Light harvesting chlorophyll a/b binding proteincsu847W21764 csu847a(lhcb), csu847b(lhcb) 2.08, 7.04–37 Zea mays
Light harvesting chlorophyll a/b binding proteincsu889UW21615 lhcb1, csu889b(lhcb) 3.09, 1.08–31Petunia sp.
Light harvesting chlorophyll a/b binding proteincsu224T18804 lhcb3 8.03–27Petunia sp.
Light harvesting chlorophyll a/b binding proteincsu227T18807 lhcb4 5.07–7 Zea mays
Light harvesting chlorophyll a/b binding proteinumc24 lhcb1, umc24b(lhcb) 3.09, 1.09
Light harvesting chlorophyll a/b binding proteincsu66 csu66a(lhcb) 1.08
Light harvesting complex I, photosystem I antenna proteincsu800W21725 csu800(lhca) 2.08–54 Hordeum vulgare
Light harvesting complex I, photosystem I antenna proteincsu818W21738 csu818a(lhca), csu818b(lhca) 2.07–2.08, 7.04–23 Hordeum vulgare
Lipoxygenasecsu719AA143907 csu719(lox) 4.09–13 Phaseolus vulgaris
Lipoxygenase isoenzyme 16C02F07L uat1(lox) 1.09–26 Hordeum vulgare
LUMINIDEPENDENS proteincsu838W21755 ldp1 3.05–21 Arabidopsis thaliana
MADS-box transcription factorBRACE 9-1 mpik24b(zmm2) 3.02
MADS-box transcription factorBRACE 9-22 mpik28(zmm8) 9.06
MADS-box transcription factorBRACE 9-37 mpik25(zmm3) 9.02
MADS-box transcription factorBRACE 9-60 mpik27a(zmm7), mpik27b(zmm7) 2.07, 7.03
MADS-box transcription factorzag1 zag1 6.05
Major allergen ml proteincsu658AA072435 csu658(mam) 2.07–2.08–19 Zea mays
Major intrinsic proteincsu177T18838 mip1 5.04–6 Oryza sativa
Malate dehydrogenasecsu249T18819 mdh5 5.03–19 Zea mays
Malate dehydrogenasecsu374T27564 mdh6 7.01–25 Zea mays
Malate dehydrogenasecsu77 mdh4 1.07–1.08–32 Zea mays
Malate dehydrogenaseIsozyme mdh3 * 3.08
Malate dehydrogenaseIsozyme mdh2 * 6.07
Male gametophyte-specific proteinMsb 8 mgs1 10.04
Malic enzymecsu16 me3 3.02–69 Flaveria trinervia
Metallothionein-like proteincsu206T18790 mtl1 4.00–4.01–9 Solanum tuberosum
Metallothionein-like proteincsu275W49888 csu275a(mtl) 8.03–12 Solanum lycopersicum
Metallothionein-like proteincsu570AA051883 csu570a(mtl), csu570b(mtl) 5.01, 1.10–1.11–13 Solanum lycopersicum
Methionine synthasecsu194T18851 csu194(met) 1.05–1.06–33 Solenostemon scutellarioides
Methionine synthasecsu503AA030695 csu503(met) 1.05–1.06–35 Catharanthus roseus
Methylenetetrahydrofolate reductasecsu134 csu134a(thf) 1.11–12 Saccharomyces cerevisiae
Methylmalonate semialdehyde dehydrogenase (acylating)asg34 asg34a(msd), asg34b(msd) 7.02, 3.06–18 Pseudomonas aeruginosa
Mitochondrial carrier familycdo202 cdo202a(mcf) 6.07–6.08–50 Arabidopsis thaliana
Mitochondrial carrier familycsu68 csu68a(mcf) 6.08–38 Arabidopsis thaliana
Mitochondrial chaperonin hsp60csu396W49907 cpn1 5.03–15 Zea mays
Mitochondrial F1-ATPase delta subunitcsu657AA072434 csu657(atpd) 2.08–39Ipomea
Mitochondrial Rieske Iron Sulfur proteincsu893LW21617 csu893(isp) 10.04–17 Zea mays
Mitogen-activated protein kinasecsu252T18821 csu252a(cdc2), csu252b(cdc2) 5.03, 9.03–9.04–42 Nicotiana tabacum
Mouse transplantation antigen5C04D09 mta1 1.10–48 Mus musculus
mRNA-splicing factorcsu363T27557 msf1 4.00–4.01–26 Drosophila melanogaster
mRNA-splicing factorPRP8-7 scri1(msf) 8.05
Multprotein-bridging factor5C01C06 uaz246b(mbf) 9.03–32 Bombyx mori
Multispanning membrane proteincdo1387 cdo1387a(emp70) 9.06–30 Homo sapiens
myb-like proteincsu184T18844 myb2 3.05–34 Arabidopsis thaliana
myb proteinumc185 p1 1.03
myb proteinumc205 pl1 6.03–6.04
myb proteinasg8 asg8(myb) 7.01–13 Homo sapiens
myc proteinumc182 r1 10.06
NaCl stress protein5C01G10 nac1 10.04–15 Hordeum vulgare
NADH dehydrogenase (ubiquinone) complex I subunitcdo122 cdo122a(nad), cdo122b(nad) 1.09–1.10, 5.02–42 Solanum tuberosum
NADPH dihydroflavonol reductaseumc199 a1 3.08–3.09
NADPH HC-toxin reductasehm1a hm1, hm2, umc276c(hm1) 1.06, 9.04, 1.06
Nascent-polypeptide associated complex, alpha subunitcsu737AA143915 csu737(npc) 1.04–33 Mus musculus
NDP-glucose-starch glucosyltransferase, starch granule boundumc25 wx1 9.03
NDP-glucose-starch glucosyltransferase, starch granule boundphi061 phi061(wx) ** 9.02
NDP-glucose-starch glucosyltransferase, starch granule boundphi022 phi022(wx) ** 9.02
NF-YB, CAAT-box binding protein subunit B5C05F12 caat1 8.04–34 Zea mays
Nitric oxide synthasecsu250T18820 csu250a(aba), csu250b(aba) 10.02, 9.01–4 Bos taurus
Nitrogen upregulatedNoi1 uat2(noi) 6.04
Nuclear binding protein 35csu598AA051902 nbp35 5.05–23 Saccharomyces cerevisiae
Nuclear transport factorcsu608AA054789 ntf1 1.06–21 Saccharomyces cerevisiae
Nucleoside triphosphatasecdo38 cdo38b(ntp) 7.05–21 Arabidopsis thaliana
Nucleotide diphosphate kinasecsu269T18831 ndk1 7.04–25 Oryza sativa
o2 proteinphi057 o2 ** 7.01
Obtusifoliol 14-α-demethylase cyp51csu25 csu25a(P450) 3.10–36 Sorghum bicolor
Opaque-2 heterodimerizing protein, transcriptional activatorcsu56 csu56a(ohp), csu56b(ohp), csu56c(ohp) csu56d(ohp) 6.02, 3.03, 2.04, 9.04–6 Zea mays
Organellar permease5C02H10 pop1 1.05–9 Saccharomyces cerevisiae
Oxygen-evolving complex 17-kD protein, ferredoxin NADP reductase binding proteincsu229T18809 csu229a(oec) csu229b(oec) 7.04, 3.05–26 Pisum sativum
Oxygen-evolving complex, 23-kD subunitumc171 umc171a(oec), umc171b(oec) 4.02, 2.09
Oxygen-evolving complex, 33-kD subunitumc172 oec33 6.01–6.02
Pathogenesis-related protein5C04F07 prp2 2.04–7 Phaseolus vulgaris
Pathogenesis-related proteinpZSS2 inra2(prp) 4.02
Pathogenesis-related proteinphi083 prp2 ** 2.04
Peptidyl prolyl isomerasergp c361 rgpc361(ppi) 1.04–11 Triticum aestivum
Pet112 protein, probable mitochondrial translation factorcdo365 cdo365(pet) 4.08Synechocystis sp.
Phenylalanine ammonia lyasecsu156 pal1 5.05–24 Oryza sativa
Phenylalanine ammonia lyasecsu358T27553 csu358b(pal) 4.05–14 Oryza sativa
Phosphate phosphoenolpyruvate translocator precursorrz698 rz698a(ppy) 1.07 Zea mays
Phosphoenolpyruvate carboxykinasecsu145 csu145a(pck) 9.05–9.06–11 Urochloa panicoides
Phosphoglucomutase (glucose-cofactor)Isozyme pgm2 * 5.02
Phosphoglycerate kinasebcd738 bcd738a(pgk), bcd738b(pgk) 6.06, 3.06–3.07–28 Triticum aestivum
Phosphohexose isomeraseIsozyme phi1 * 1.10–1.11
Phospholipid transfer proteincsu136 csu136(plt) 10.01
Phosphoprotein phosphatase pp2A regulatory subunitcdo590 cdo590(ppr) 9.03–25 Pisum sativum
Phosphoribulokinaseumc209 umc209(prk) 8.04
Photosystem I chain D precursorcsu663AA072440 csu663a(psaD), csu663b(psaD) 5.00–5.01, 1.11–39Ipomea
Photosystem I subunit Ncsu237T18816 csu237a(psaN), csu237b(psaN) 10.03, 3.05–23 Hordeum vulgare
Photosystem I subunit Numc18 umc18a(psaN) 3.05
Photosystem II, 10-kD peptidecsu754AA143923 psb3 4.04–32 Spinacia oleracea
Phytochrome Arz912 rz912a(phy) 1.09–1.10–56 Oryza sativa
Phytochrome-regulated genecsu368T27562 csu368(phr) 8.00–8.01–23 Ipomea, Arabidopsis
Phytoene synthasecsu572AA051885 psy2 8.07–58 Lycopersicum esculentum
Phytoene synthaseumc111 umc111(psy) 4.11
Phytoene synthaseplQ60-6M35006.01–6.02
Plasma membrane major intrinsic proteinrz509 rz509a(mip), rz509b(mip) 7.02, 2.06–20 Beta vulgaris
Pollen ubiquitin regulatorIsozyme pur1 * 2.08
Pollen, extensin-likepSS1 fco1a(pex), fco1b(pex) 2.09, 2.09
Polyubiquitincsu330T26953 csu330(ubi) 4.10–69 Zea mays
PPi-dependent phosphofructo-1-kinasecsu228T18808 csu228(pfk) 9.02–14 Entamoeba histolytica
Prohibitin, B-cell receptor-associated proteincsu865W21711 csu865(phb) 1.12–23 Mus musculus
Proteasome C95C02A05 prc1 9.02–55 Spinacia oleracea
Protein disulfide isomerase5C11B04 uaz298(PDI) 4.03–71 Zea mays
Protein kinase3B1 wsu1(ptk) 9.04
Protein kinasecdo1417 cdo1417b(ptk) 10.06–10 Saccharomyces cerevisiae
Protein kinasecsu310W49895 csu310(ptk) 6.05–10 Oryza sativa
Protein kinasepKICAT umc265(ptk) 6.05
Protein kinasepZmPK4 umc269(ptk) 10.07
Protein kinaseZmPK3 umc266a(ptk), umc266b(ptk), umc266c(ptk), umc266d(ptk) 1.03, 1.01, 6.06–6.07, 8.07
Protein kinasecsu100 csu100(ptk) 4.05–9Ipomea
Protein kinasepZmPRK111 ptk3 1.06
Protein kinasergp c86 rgpc86(ptk) 8.06–8.07–21 Glycine max
Protein kinase inhibitormZ2-12 fmi1(pki) 1.03–1.04
Protein kinase (endosperm)csu1041LW49420 csu1041a(ptk), csu1041b(ptk) 1.05, 8.05–16 Oryza sativa
Proteolipid, vacuolar ATPasecsu30 atp1 3.05–17 Gossypium hirsutum
Pyrophosphate-energized proton pump, vacuolarcsu220T18800 ppp1 5.07–17 bovine
Pyruvate deydrogenase phosphatasecsu675AA072449 csu675a(prh), csu675b(prh) 1.05–1.06, 8.01–8 Giardia lamblia
Pyruvate kinasecdo127 cdo127a(pyk), cdo127b(pyk) 4.08, 10.01–10 Saccharomyces cerevisiae
Pyruvate, orthophosphate dikinasecsu314T26948 pdk1 6.05–25 Zea mays
Pyruvate, orthophosphate dikinaseC4PPDK(4) pdk1, pdk2 6.05, 8.04
Pyruvate, orthophosphate dikinasecsu155 pdk1, pdk2 6.05, 8.04–40 Zea mays
Pyruvate, orthophosphate dikinasecsu540AA030719 pdk1 6.05–24 Zea mays
Pyruvate, orthophosphate dikinasecsu764AA143928 pdk1, pdk2 6.05, 8.04–50 Zea mays
Pyruvate, orthophosphate dikinaseumc173 pdk1 6.05
rga1 proteincdo344 cdo344a(rga), cdo344c(rga) 3.05, 1.05–11 Arabidopsis thaliana
Ribonucleoprotein A3rz323U: rnp2 8.01–18 Homo sapiens
Ribosomal inactivating proteincb70-1 ncr200b(rip) 5.03
Ribosomal protein Po, acidiccsu565AA051879 csu565(rpPo) 4.04–4.05–12 Oryza sativa
Ribosomal protein, 60S acidiccsu745AA143921 csu745a(rpPo), csu745b(rpPo), csu745c(rpPo), csu745d(rpPo), csu745e(rpPo) 10.05, 4.09, 10.03, 1.03, 1.09–29 Zea mays
Ribosomal protein CL9, plastidcsu799LAA661454 csu799(rpL9) 5.07–5.08–29 Arabidopsis thaliana
Ribosomal protein L105C01D03 uaz198a(rpL10), uaz198c(rpL10), uaz198d(rpL10) 3.09–3.10, 1.05, 1.04–11 Caenorhabditis elegans
Ribosomal protein L11csu862LW11778 csu862a(rpL11), csu862b(rpL11) 5.04, 4.09–38 Medicago sativa
Ribosomal protein L14csu36 csu36a(rpL19), csu36b(rpL19) 4.09–4.10, 5.03–5.04–16 Medicago truncatula
Ribosomal protein L15rgp c1122 rgpc1122a(rpL15), rgpc1122b(rpL15), rgpc1122c(rpL15), rgpc1122d(rpL15), rgpc1122e(rpL15) 2.07, 7.01, 1.02, 10.03, 5.03–62 Arabidopsis thaliana
Ribosomal protein L17csu590AA051898 csu590(rpL17) 1.06–42 Hordeum vulgare
Ribosomal protein L19csu566AA051880 rpl19 5.05–15 Cyanophora paradoxa
Ribosomal protein L21csu883LW21610 csu883(rpL21) 9.07–33 Arabidopsis thaliana
Ribosomal protein L27acsu652AA072430 csu652(rpL27) 5.03–38 Arabidopsis thaliana
Ribosomal protein L30csu891W21692 csu891(rpL30) 8.01–26 Homo sapiens
Ribosomal protein L39csu651AA072429 csu651(rpL39) 9.02–6 Oryza sativa
Ribosomal protein L39csu733AA143911 csu733(rpL39) 9.02–32 Oryza sativa
Ribosomal protein L55C05D07 uaz260a(rpL5), uaz260b(rpL5) 3.06, 1.01–7 Oryza sativa
Ribosomal protein L5rgp c385 rgpc385a(rpL5), rgpc385b(rpL5) 1.01, 3.05–54 Oryza sativa
Ribosomal protein L7csu202T18786 csu202(rpL7) 4.08–13 Solanum tuberosum
Ribosomal protein L7csu505AA030697 csu505(rpL7) 1.06–57 Oryza sativa
Ribosomal protein L9 precursorcsu695AA072464 csu695(rpL9) 5.07–5.08–9 Arabidopsis thaliana
Ribosomal protein S125C08C03 uaz351a(rpS12) 7.02–31 Sus scrofa
Ribosomal protein S12pCrp1-3 uor1a(rpS12), uor1b(rpS12), uor1c(rpS12) 6.08, 8.03, 7.02
Ribosomal protein S14csu474AA011877 csu474(rpS14) 4.04–4.05–16Datura
Ribosomal protein S22csu28 csu28a(rpS22) 9.06–18 Oryza sativa
Ribosomal protein S25csu974W21680 rps25 3.04–35 Lycopersicum esculentum
Ribosomal protein S7csu742AA143919 csu742b(rpS7), csu742a(rpS7) 4.05, 8.05–21 Xenopus laevis
Ribosomal protein S8csu34 csu34b(rpS8) 4.09
Ribosomal protein S9rgp c6 rgpc6(rpS9) 3.04–3.05–37 Dictyostelium discoideum
Ribosome-inactivating proteinumc197 umc197a(rip) 1.09
Ribosome-inactivating proteinZmRIP3 rip1 8.04
Ribulose 1,5-bisphosphate carboxylase activasecsu901W21622 rca1 4.00–4.01–25 Hordeum vulgare
Rieske iron-sulfur protein, chloroplastcsu271W49887 ris2 4.09–21 Spinacia oleracea
RNA binding proteincsu17 csu17b(rnp) 2.07–2.08–13 Nicotiana plumbaginifolia
RNA binding proteinrgp c746 rgpc746(rnp) 1.09–19 Arabidopsis thaliana
RNA binding proteinZmRNP1 uwm2(rnp) 5.02
RNA helicasecsu554AA051871 csu554a(rnh), csu554b(rnh) 1.09, 5.02–46 Arabidopsis thaliana
S-adenosyl-l-homocysteine hydrolaserz900 rz900(ahh) 4.04–76 Catharanthus roseus
S-adenosylmethionine decarboxylasecsu6 sam1 10.04–10.05–15 Arabidopsis thaliana
S-adenosylmethionine decarboxylaserz740 rz740(sam) 10.05–41 Oryza sativa
S-receptor kinasecsu811W21732 srk1 2.09–13 Brassica oleracea
Salt-inducible proteinrz166 rz166(nac) 5.04–5.05–14 Nicotiana tabacum
sec3 protein, root hair defective mutantias7 rth1 1.09
sec61 protein γ-subunitcsu923W21637 csu923(sec61) 6.02–6.03–7 Oryza sativa
Serine carboxypeptidase Icsu649AA054821 csu649(scp) 1.04–15 Oryza sativa
Serine/threonine protein phosphataseumc202 prh1 4.07
Serine/threonine protein kinaseasg45 asg45(ptk) 1.04–22 Brassica napus
Serine/threonine protein kinasecdo87 cdo87a(ptk), cdo87b(ptk) 5.01, 1.10–1.11–6 Caenorhabditis elegans
Seryl tRNA synthasecdo520 cdo520(ser) 4.01–4.02–7 Haloarcula marismortui
Shikimate-5-dehydrogenaserz261 rz261a(sad), rz261b(sad) 10.03, 3.04–3.05–15 Nicotiana tabacum
Shrunken-initiator binding proteinpFLK4 ibp1 9.06
SIK1P-suppressor of 1κ Brgp c198 rgpc198a(sik), rgpc198b(sik) 1.04, 8.06–51 Arabidopsis thaliana
Soluble inorganic pyrophosphatasecsu571AA051884 csu571a(ipp), csu571b(ipp) 2.03, 10.07–26 Hordeum vulgare
Steroid membrane binding proteinrz583 rz583a(msb) 1.08–15 Sus scrofa
Sucrose phosphate synthasecsu328T26951 sps2 3.05–40 Zea mays
Sucrose synthaseumc190 sus1 9.04
Sucrose synthaseumc207 sh1 9.01
Sugar transporterrz500 rz500(stp) 1.05–11 Arabidopsis thaliana
Sulfate adenyltransferaserz630 rz630a(sat), rz630b(sat) 1.10, 4.03–62 Solanum tuberosum
Superoxide dismutasecsu182T18842 sod4 1.04–55 Zea mays
TATA-binding proteinpTBI tbp1, tbp2 1.09, 5.02–5.03
Teosinte branched-like proteinphp20581 php20581a(tb), ph20581b(tb) 7.01, 2.10–11 Arabidopsis thaliana
Thiol proteaseccp2 tjp1(thp) 2.07
Thiol proteaseMir1 mir1 6.02
Thiol proteasemir2 mir2(thp) 6.02
Thiol proteasemir3 mir3a(thp), mir3b(thp), mir3c(thp) 9.01, 2.02, 10.07
Thiol proteasemir4 mir4(thp) 6.02
Thiol protease inhibitorcsu96 csu96a(psei), csu96b(psei) 3.06, 8.08–24 Zea mays
Thioredoxincsu727AA143909 csu727(trh) 6.06–22 Arabidopsis thaliana
Thioredoxincsu604AA054787 csu604a(trh), csu604b(trh) 1.11, 5.00–5.01–16 Arabidopsis thaliana
Thioredoxin Mcsu439W59835 csu439(trm) 3.05–32 Zea mays
Threonine synthasecsu189T18847 csu189(thr) 3.07–3.08–14 Arabidopsis thaliana
Thylakoid assembly proteinpThal1-2 tha1 3.04
Transcription factorcsu38 csu38a(taf), csu38b(taf) 3.06, 8.07–26 Homo sapiens
Translation initiation factor 2B δ subunitcsu574AA051886 csu547a(eif2B), csu574b(eif2B) 5.02–5.03, 1.06–24 Schizosaccharomyces pombe
Transmembrane proteinpZSS4 inra1(tmp) 2.03
Triose-phosphate isomerasecsu301W49890 tpi4 3.04–28 Zea mays
Tryptophan Acsu868W21714 csu868(trp) 1.11–35 Zea mays
Tryptophan synthase B-subunitumc193 orp1, orp2, umc193c(orp), umc193d(orp) 4.04–4.05, 10.04, 7.02, 4.05
ts2 mutant, short-chain alcohol dehydrogenasecsu149 sca1 5.00–5.01–11 Zea mays
Ubiquinol-cytochrome C-reductasecsu536AA030716 csu536(ccr) 1.11–33 Solanum tuberosum
Ubiquitincsu562AA051877 csu377a(ubi), csu562b(ubi) 4.10, 5.03–5.04–59 Antirrhinum majus
Ubiquitincsu533AA030713 csu377a(ubi) 4.10–63 Phaseolus vulgaris
Ubiquitin-carrier proteincsu591AA051899 csu591(uce) 8.08–33 Lycopersicum esculentum
Ubiquitin-carrier proteincsu797W21709 csu797(uce) 10.03–10.04–38 Triticum aestivum
Ubiquitin-conjugating enzymecsu204T18788 csu204(uce) 8.04–10 Caenorhabditis elegans
Ubiquitin-conjugating enzyme5C05D12 uce1 1.08–83 Arabidopsis thaliana
Ubiquitin-conjugating enzymecsu456AA011862 csu456(uce) 3.08–25 Arabidopsis thaliana
Ubiquitin-conjugating enzymecsu69,4AA072463 csu694a(uce), csu694b(uce) 9.04, 1.04–1.05–8 Arabidopsis thaliana
Ubiquitin-conjugating enzymepAS20a std20a(uce), std20b(uce) 9.07, 1.01
Ubiquitin-conjugating enzymeUBC7 uwm1a(uce), uwm1b(uce), uwm1c(uce) 8.04, 9.03, 8.07
Ubiquitin-conjugating enzymecsu786W21700 csu786(uce) 8.08–50 Arabidopsis thaliana
Ubiquitin ribosomal protein 28csu377T27566 csu377a(ubi), csu377b(ubi) 4.10, 5.04–35 Solanum tuberosum
UDP-glucose pyrophosphorylase5C02H07L: ugp1 2.07–77 Hordeum vulgare
UMP/CMP kinasecsu612AA054793 uck1 6.01–41 Arabidopsis thaliana
Vacuolar ATPasecsu848W21765 csu848a(vpp), csu848b(vpp) 4.09, 7.02–26 Zea mays
Vesicle fusion ATPaseE92 umc272(vfa) 9.07
Water-stress-induced proteincsu222T18802 csu222a(wsi), csu222b(wsi) 1.09, 5.02–5.03–10 Oryza sativa
Water-stress-induced proteincsu924W21638 csu924(wsi) 1.04–49 Oryza sativa
Zein-1, α zeinphi096 zp1 ** 4.04
Zinc-finger proteinrgp c975 rgpc975(zfp) 5.01–78 Hordeum vulgare
  • * Locus detected by isozymes.

  • ** Locus detected by SSRs.

  • a Functions were determined by contributing individuals for individual cDNAs and by homology search as detailed in the materials and methods section for core markers and csu clones.

  • b Multiple accession numbers supplied where more than one sequence of the probe was submitted.

  • c Bin assignments are presented in locus order.

  • d P value is given as the exponent of 10 (i.e., 13 = 10–13).

  • e Only the organism with the lowest P value is listed for each probe.