TABLE 2

For each locus, the allele sizes (in base pairs) are listed, followed by their classification as “sika” or “red” alleles and their frequency within sika-like and red-like individuals

Locus (no. alleles)AlleleRaceFrequency in sikaFrequency in red
BOVIRBP (9)144Sika0.60610
146Sika0.05550.068
150Red00.1238
152Red00.0936
154Red0.01730.117
156Red0.06940.2982
160Red00.1987
162Red00.0146
166Red00.0146
Ø Red0.25170.0714
FCB193 (14)101Red00.0635
103Red0.01520.0076
105Red00.0076
107Red00.1224
109Red00.0319
111Red00.3035
113Red00.0794
115Red00.0153
117Red00.0076
119Red00.1411
121Red00.1295
127Red00.0076
129Sika0.98480
139Red00.0077
Ø Red00.0751
RM095 (11)122Red00.0379
126Sika0.99370.0061
128Red00.0689
130Red00.0627
132Red0.00630.2195
134Red00.2985
136Red00.106
138Red00.0031
140Red00.0613
142Red00.0861
144Red00.0153
0Red00.0345
REM025 (5)157Red00.0092
171Red00.8159
173Red00.0945
197Sika1.0000
209Red00.0061
Ø Red00.0742
BM6438 (6)251Red0.01270.4932
253Red00.231
255Red00.1857
263Red00.0122
267Sika0.32280
277Sika0.66460
Ø Red00.078
VH054 (14)79Red00.012
81Red00.043
83Red00.0122
85Red00.0373
87Red00.3941
89Red00.0994
91Red00.147
93Red00.0123
96Red00.012
97Red00.006
102Red00.028
106Red00.0661
110Sika1.0000.009
139Red00.003
Ø Red00.1184
HH064 (11)107Red0.01280.0482
117Red00.003
119Red00.018
121Red00.0238
123Red00.0181
125Sika0.95510.0178
127Red00.0239
131Red0.02560.4132
133Red0.00640.1634
135Red00.0579
137Red00.0059
Ø Red00.2067
TGLA387a (27)128Red00.0029
130Red00.0059
132Red00.0029
134Sika0.94870.0147
138Red00.0059
139Red00.0029
140Red00.0608
141Red00.0207
142Red00.0576
143Red00.0059
144Red0.00640.0724
172Red00.0059
198Red00.0029
(–13) + ΩRed00
(–12) + ΩRed00.0059
(–11) + ΩRed00.0029
(–10) + ΩRed00.0059
(–9) + ΩRed00.0088
(–8) + ΩRed0.00640.0177
(–7) + ΩRed00.0148
(–6) + ΩRed00.0209
(–5) + ΩRed0.02560.0178
(–4) + ΩRed0.00640.0179
(–3) + ΩRed00.0089
(–2) + ΩRed0.00640.0118
(–1) + ΩRed00.0059
Ω Red00.0669
Ø Red00.5323
DRB003 (10)151Red00.0341
157Red0.01280.3886
159Red00.003
161Red00.0824
163Red0.00640.0061
167Red0.01280.0642
171Red00.0061
181Red00.003
187Sika0.01920
189Sika0.94870.0245
Ø Red00.3881
MM012 (3)89Red00.741
91Red00.256
93Sika10.003
Ø Red00
FCB048 (4)143Red0.05130.9028
145Red00.0309
155Sika0.79490.0063
157Sika0.15380
Ø Red00.0599

The frequencies are maximum-likelihood estimates, assuming the presence of null alleles (Ø); these estimates are made without assuming that missing data are due to null homozygotes (see text).

  • a At TGLA387, some alleles were very long (>250 bp) and so are scored relative to a reference allele of 250 bp, designated Ω.