Restriction site and indel genotype for each haplotype

In(2L)t-Malawi
0111010000011101101110100011
0111010000111101101110100001
011101000001110110111101001
0010110000011101111110100001
0011010000011101101111010011
0111010000011101111001000001
0110010000011101101110100001
0110010000011111100110100001
In(2L)t-Ivory Coast
0111010000011101101110101001
0110010000011101101111001011
0110010000011100101111001013
0100011000011100101111001011
0111010000011101100010110011
0010110000011101101110100003
0110010000011101101111011018
0011010000011101101111011014
0111010000011101101010100012
0110110000011101101110110001
0111010000011111101111011011
0111010000011101101111000011
01110100000111011000101000110
0010010000011101101111011012
0010110000011101101110110001
0111010000011101101110100003
0111010000011101101111011019
In(2L)t-France
0010010000011101101111011012
0111010000011101101111001011
0110010000011101101111010011
0111000000011101100000111012
0111010000011101101110111011
0011010000011101101110111011
0010010000011101101111010011
Standard-Slow-Malawi
0111010000011101101110101001
0111010000011101101110100011
0111010000011101101110100001
0111010000111101101110100001
0111010000011111100110110001
0110010000011101101110110011
0111010000011101100110100003
0111010000011111101110100011
0111010000011101111110100001
0111010000011111110110110002
0111010000111101100110110011
0111010000011101101111010014
0110010000111101100110100011
0011010000011101100110100001
0110010000011111101111011001
0110010100011111111110100001
0011010000111101101110100001
0110010000011101100110110011
0110010000111101100110101002
0111010000011111101110100001
Standard-Slow-Malawi
0111010000011101100110100011
0111010000111101110110100001
0110010000011101100110101001
0110010000111111100110101001
0110010000011111100110110001
0010010000011111101110100001
0110010000011101101111010001
0111010000111111101110100001
0110010000011111010110110001
0111010000011111100111011002
0110010000011101101111010011
0110010000011101101110100003
0010010000011111100110110001
0110010000011101111110110001
0110010000111111100110100001
0110010000011111100110100001
0110010000010101101110100001
0110010000111101101110101001
0110110000011111100110111001
0111010000111101100111010011
0111010000011111100110100012
0110010000111101100110110001
0111010000111101100110110001
Standard-Slow-Ivory Coast
0111010000011101101110100016
0010110000011101101110100001
0111010000011101101110101011
0111000000011101100010110011
1110010000011111101110100001
0111010000011111101110101011
0111010000011101100010101011
0111000000011101100010111011
0111010000011101101111011001
0111010000011101101110100001
0111010000011101101111011012
Standard-Slow-France
0110010000011101101111010011
0111010000011111101111011012
0010010000011101101111011011
0010010000001001101110101011
0110010000001001101110111013
0111010000011101101111001012
0010010000011101101110100011
0111010000011101101110111011
0110010000011101101110101012
0110010000011101101110111011
0110010000011111101111010111
0010010000011101101111010011
0111010000011111101111010016
0111010000011111101111000011
0110010000001001101110101012
0110010000001001101110110011
0110010000011111101111010001
0110010000001001101111010013
Fast-Malawi
0110010010011101101111010011
0110010010011101101011010011
Fast-Ivory Coast
01100100100111011011110110110
0110010010011111101110111011
0110010011011111101111011013
0110010010011101101111001011
Fast-France
0110010011011111101111011011
0110010010011101101111001012
0111010000011111101111010001
0110010010011101101111010014
0110010011011111100111001014
0110010001011101101101010011
0110010010011111101111010011
0110010011011111101111001011
0110010010011111101111010011
01100100110111111011110100116
0110010011011111101011010011
0110010011011101101111000011
0110010000011101101111011011
0110010001011111101111010012
0110010001011111101101010011
0110010000011101101111010017
  • Characters are, from 5′ to 3′: indel ID1, MspI-346, Ddel 9, BanI 102, indel ID2, HaeIII 287, DdeI 321, AluI 562, indels A1, A2 and ID3, C/oI 573, MspI 583, HaeIII 688, HaeIII 816, MspI 818, CfoI 864, indel ID5, Sau3AI 1354, HaeIII 1425, Sau96I 1425, DdeI 1518, DdeI 1527, AluI 1596, indel ID6, DdeI 1875, HaeIII 1925. The last column is the number for each haplotype.