R(1_{q}) | R(a) | R(σ^{2}) | R(b_{qj}) | R(c_{kj}) | P_{a} = P_{d} | Iterations | BGCs | |
---|---|---|---|---|---|---|---|---|
Complete data | ||||||||
Chromosome 1 | 1.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 500,000 | 2 |
Chromosome 2 | 1.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 500,000 | 0,1,6 |
Chromosome 3 | 2.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 1,000,000 | 2 |
Incomplete data | ||||||||
Chromosome 1 | 1.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 500,000 | 2,3 |
Chromosome 2 | 1.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 500,000 | 1,6 |
Chromosome 3 | 2.0 cM | 0.01 | 0.01 | 0.1 | 0.1 | 1/3 | 1,500,000 | 3 |
Notation is as follows: R(1_{q}) is the range of proposals for the QTL location parameters, R(a) for the regression mean, R(σ^{2}) for the residual variance, R(b_{qj}) for the regression coefficients of the QTL genotypes, and R(c_{kj}) for the regression coefficients of the background control genotypes.