Table 3

Experiment II reanalysis: refined QTL positions

QTLFixedmarkerRefined position (cM)Original position (cM)LOD scoreRefined CI (cM)Original CI (cM)
10kl1.1PZD00119-T40.3840.2510.038.64–41.4839.00–41.25
10kl1.1PZD00119-M40.2539.00–41.25
10kl1.2umc1298-T46.2346.259.245.73–46.9345.75–46.75
10kl1.2umc1298-M45.3746.2511.042.24–51.6345.75–46.75
cupr1.1PZD00119-T30.5629.004.125.16–35.3322.50–33.25
cupr1.1PZD00119-M29.0022.50–33.25
cupr1.2umc1914-T48.9946.5012.845.79–51.7845.25–49.25
cupr1.2umc1914-M46.1846.5018.944.43–49.2045.25–49.25
  • M, maize allele; T, teosinte allele. LOD scores obtained with a subset of the full data in which one of the two QTL affecting the trait was fixed for a single genotype.