TABLE 1

Library assembly statistics

SNPsRead depth
DiploidHaploidCorrelation
+/−+/+Meanσ/μ3-HE7-HE8-HE
ycnbwsp_26.7 × 10−62.4 × 10−62.6 × 10−618.570.4550.0656 (0.0598–0.0714)0.2001 (0.1945–0.2057)0.2620 (0.2565–0.2674)
ycnbwsp_3-HE1.5 × 10−53.0 × 10−63.6 × 10−622.580.6340.7472 (0.74460.7498)0.6904 (0.68740.6935)
ycnbwsp_7-HE1.7 × 10−52.9 × 1063.3 × 10−621.040.4260.7621 (0.75970.7646)
ycnbwsp_8-HE1.9 × 10−52.8 × 10−63.1 × 10−617.450.637
  • The proportion of sites in the assemblies with read depth of ≥10 that were called as different from the reference sequence (SNPs), either as heterozygotes (+/−) or as homozygotes (−/−) in a MAQ diploid assembly or as a divergent allele (−), in a MAQ haploid assembly are shown. Three properties of the distributions of read depth are presented: the mean, the coefficient of variation, and the correlation between pairs of assemblies at sites spaced 1000 bp apart (see text). The approximate 5% and 95% confidence intervals are in parentheses.