Supplemental Material for Noble et al., 2017
Supplemental Material
- DataDocument
- File S1 -
Full RIL designations (sub-panel, population replicate). (.txt)
- File S2 -
Full designation of CeMEE sub-panels. (.txt)
- File S3 -
Founder variant calls. (.zip)
- File S4 -
Filtered diallelic markers segregating in the founders and RILs. (.zip)
- File S5 -
Filtered diallelic markers segregating in the founders and RILs. (.zip)
- File S6 -
Interchromosomal LD tests. (.R.zip)
- File S7 -
Interpolated genetic positions used for imputation of RIL genotypes. (.zip)
- File S8 -
Founder genotype simulations for haplotype reconstruction. (.R.zip)
- File S9 -
Raw fertility data with all metadata used for modeling. (.zip)
- File S10 -
Standardized model coefficients used for QTL mapping. (.zip)
- File S11 -
Raw size data with all metadata used for modeling. (.zip)
- File S12 -
Standardized model coefficients used for QTL mapping. (.zip)
- File S13 -
Marker LD weights used for calculation of genetic similarity. (.txt)
- File S14 -
GWAS p-values for size and fertility. (.zip)
- File S15 -
Genetic similarity matrices (fertility). (.txt)
- File S16 -
Genetic similarity matrices (size). (.txt)
- File S17 -
GWAS simulations. (.py.zip)
- File S18 -
GWAS code. (.py.zip)
- File S19 -
Interaction test (.py.zip)
- File S20 -
Sum of interaction score code. (.R.zip)
- File S21 -
HPLC genotyping at a subset of SNPs for the A140 RILs. (.zip)
- File S22 -
Contains the supplementary methods and Figures S1-S7. (.pdf)