Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel

Supplemental Material for Noble et al., 2017

Supplemental Material

• DataDocument
• File S1 -

  Full RIL designations (sub-panel, population replicate). (.txt)

• File S2 -

  Full designation of CeMEE sub-panels. (.txt)

• File S3 -

  Founder variant calls. (.zip)

• File S4 -

  Filtered diallelic markers segregating in the founders and RILs. (.zip)

• File S5 -

  Filtered diallelic markers segregating in the founders and RILs. (.zip)

• File S6 -

  Interchromosomal LD tests. (.R.zip)

• File S7 -

  Interpolated genetic positions used for imputation of RIL genotypes. (.zip)

• File S8 -

  Founder genotype simulations for haplotype reconstruction. (.R.zip)

• File S9 -

  Raw fertility data with all metadata used for modeling. (.zip)

• File S10 -

  Standardized model coefficients used for QTL mapping. (.zip)

• File S11 -

  Raw size data with all metadata used for modeling. (.zip)

• File S12 -

  Standardized model coefficients used for QTL mapping. (.zip)

• File S13 -

  Marker LD weights used for calculation of genetic similarity. (.txt)

• File S14 -

  GWAS p-values for size and fertility. (.zip)
  
  
  
  
  
  
  
  

• File S15 -

  Genetic similarity matrices (fertility). (.txt)

• File S16 -

  Genetic similarity matrices (size). (.txt)

• File S17 -

  GWAS simulations. (.py.zip)

• File S18 -

  GWAS code. (.py.zip)

• File S19 -

  Interaction test (.py.zip) 

• File S20 -

  Sum of interaction score code. (.R.zip)

• File S21 -

  HPLC genotyping at a subset of SNPs for the A140 RILs. (.zip)

• File S22 -

  Contains the supplementary methods and Figures S1-S7. (.pdf)